Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-1Q99801 Y_RNA.192-201ENST00000363977 102 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 RNU6-83P-201ENST00000384568 112 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AF228730.1-201ENST00000397972 663 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 SDHCP2-201ENST00000398565 501 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC136624.1-201ENST00000400791 413 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 RPS3AP23-201ENST00000401762 784 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AL049697.2-201ENST00000403708 294 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AL133264.1-201ENST00000407157 562 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AL136133.1-201ENST00000413694 376 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC004022.2-201ENST00000413824 193 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 FCF1P2-201ENST00000415284 583 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 IPMKP1-201ENST00000425988 855 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 C4BPAP2-201ENST00000428434 478 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC007327.1-201ENST00000447461 264 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 ABCF2P2-201ENST00000450549 296 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC108145.1-201ENST00000503770 153 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC025554.1-201ENST00000505641 188 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 ATP1B1P1-201ENST00000509767 915 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC093755.1-201ENST00000512950 1023 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC015795.1-201ENST00000513669 327 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 RN7SKP96-201ENST00000516948 297 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AP001207.1-201ENST00000524051 481 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 OR5BC1P-201ENST00000529327 739 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 SERPINE4P-201ENST00000554978 281 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC068790.4-201ENST00000602474 263 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC012603.1-201ENST00000606424 528 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AP003392.5-201ENST00000607857 415 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 MIR378J-201ENST00000611988 109 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC023158.2-201ENST00000614876 543 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 AC009464.1-201ENST00000615731 469 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 MIR7703-201ENST00000620784 77 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 MIR7641-1-201ENST00000627518 61 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 FP325313.1-201ENST00000638228 703 ntBASIC3.75□□□□□ -1.81
NKX3-1Q99801 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-1Q99801 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-1Q99801 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-1Q99801 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-1Q99801 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-1Q99801 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-1Q99801 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC109315.1-201ENST00000584143 1347 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-1Q99801 MIR93-201ENST00000385024 80 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 RNA5SP39-201ENST00000411245 120 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AL450992.3-201ENST00000413192 568 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 BOLA3P4-201ENST00000418151 400 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 MTCO2P21-201ENST00000419780 677 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC010099.3-201ENST00000423896 409 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 DPRXP1-201ENST00000426312 460 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AC105402.2-201ENST00000438503 358 ntBASIC3.74□□□□□ -1.81
NKX3-1Q99801 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-1Q99801 Z99714.1-201ENST00000450463 807 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms