Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 CR383658.2-201ENST00000547576 1525 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AP003122.5-201ENST00000527668 3766 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 SNORA7.2-201ENST00000364446 145 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 CGA-201ENST00000369582 729 ntTSL 5 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 SNORA70F-201ENST00000384142 135 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 MIR223-201ENST00000385204 110 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC093162.1-201ENST00000419682 124 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC245054.1-201ENST00000420944 258 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 Z82198.3-201ENST00000421145 199 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC241520.1-201ENST00000422654 1099 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AL691449.1-201ENST00000426570 421 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 TBCAP1-201ENST00000436520 327 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 RPS29P6-201ENST00000438196 145 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 RPL12P11-201ENST00000439970 501 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 NECAP1P2-201ENST00000455668 727 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 BX284632.1-201ENST00000478218 541 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC098818.1-201ENST00000478593 252 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 RPL37P25-201ENST00000507308 276 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 RNA5SP367-201ENST00000516557 118 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 RAB9BP1-201ENST00000519581 626 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 OR8G5-201ENST00000524943 1041 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 PTP4A1P6-201ENST00000531034 478 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 MIR4446-201ENST00000578505 67 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 SNORD84-203ENST00000584275 78 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC090948.1-201ENST00000607464 549 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 U3.45-201ENST00000607547 219 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC104237.2-201ENST00000612456 443 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 RDM1-219ENST00000615378 542 ntTSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC010338.1-201ENST00000621823 717 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 AC073055.1-201ENST00000456901 1621 ntBASIC1.94□□□□□ -2.1
LINC00643Q86TS7 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC1.94□□□□□ -2.1
LINC00643Q86TS7 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 RNF19BPY-201ENST00000458209 1550 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC093010.3-201ENST00000570269 15214 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AL592148.3-201ENST00000608771 2646 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AL356317.1-201ENST00000396110 1436 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 RNA5SP507-201ENST00000363603 121 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC068538.1-201ENST00000376856 336 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 RNA5SP105-201ENST00000391123 113 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC016397.1-201ENST00000412463 242 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC006466.1-201ENST00000438721 289 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC025674.1-201ENST00000507074 324 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 APOBEC3AP1-201ENST00000511396 287 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 RNU6-943P-201ENST00000516960 98 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC090136.1-201ENST00000520009 240 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AC069200.1-201ENST00000609511 323 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 uc_338.25-201ENST00000613756 156 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 FRG1DP-201ENST00000635586 771 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 AL049767.1-202ENST00000637826 242 ntBASIC1.93□□□□□ -2.1
LINC00643Q86TS7 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
LINC00643Q86TS7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 RNA5SP123-201ENST00000363244 119 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms