Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
USP39Q53GS9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 Y_RNA.38-201ENST00000362617 102 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 Y_RNA.311-201ENST00000365068 96 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 SNORA62-201ENST00000365493 153 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AC009302.1-201ENST00000417147 390 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.16□□□□□ -1.58
USP39Q53GS9 AC006065.1-201ENST00000422539 802 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.16□□□□□ -1.58
USP39Q53GS9 RPL7L1P1-201ENST00000448259 785 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.16□□□□□ -1.58
USP39Q53GS9 TPT1P12-201ENST00000448968 492 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.16□□□□□ -1.58
USP39Q53GS9 AC063943.1-201ENST00000465434 453 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 RPL30P9-201ENST00000465586 330 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 RPS3AP17-201ENST00000472594 777 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 RPL23AP37-201ENST00000479658 549 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.16□□□□□ -1.58
USP39Q53GS9 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.16□□□□□ -1.58
USP39Q53GS9 OR4C2P-201ENST00000530855 1064 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.16□□□□□ -1.58
USP39Q53GS9 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.16□□□□□ -1.58
USP39Q53GS9 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.16□□□□□ -1.58
USP39Q53GS9 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
USP39Q53GS9 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.16□□□□□ -1.58
USP39Q53GS9 AC068020.1-201ENST00000594215 661 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AC130352.1-201ENST00000602979 661 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AL162431.4-201ENST00000604674 411 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 MIR6780A-201ENST00000615089 68 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AC069209.1-201ENST00000619282 651 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.16□□□□□ -1.58
USP39Q53GS9 AC073869.10-201ENST00000642016 354 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
USP39Q53GS9 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
USP39Q53GS9 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.16□□□□□ -1.58
USP39Q53GS9 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
USP39Q53GS9 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 PCAT14-202ENST00000627127 3935 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.15□□□□□ -1.58
USP39Q53GS9 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
USP39Q53GS9 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
USP39Q53GS9 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
USP39Q53GS9 RNU6-374P-201ENST00000364146 108 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USP39Q53GS9 RNU5A-6P-201ENST00000384136 116 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 Y_RNA.509-201ENST00000384506 99 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 Y_RNA.535-201ENST00000384612 99 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 MT-TL1-201ENST00000386347 75 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 SNORD65.1-201ENST00000390889 71 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 RN7SKP56-201ENST00000410513 331 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 USP9YP20-201ENST00000419224 558 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 RPL21P32-201ENST00000419877 477 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AC022022.1-201ENST00000430304 178 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.15□□□□□ -1.59
USP39Q53GS9 GDI2P2-201ENST00000445131 608 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AC073264.2-201ENST00000448886 166 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AC013267.1-201ENST00000458227 267 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 RN7SL385P-201ENST00000468873 276 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
USP39Q53GS9 IGLV2-34-201ENST00000490007 283 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 RPS24P16-201ENST00000497294 392 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 MTCYBP18-201ENST00000501056 747 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.15□□□□□ -1.59
USP39Q53GS9 ARL4AP2-201ENST00000507378 601 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC093824.1-201ENST00000508796 343 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC091133.4-201ENST00000511142 308 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC006427.1-201ENST00000514359 712 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 IGKV1-32-201ENST00000519290 311 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC022360.1-201ENST00000521058 340 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
USP39Q53GS9 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AP006289.1-201ENST00000538089 277 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC040958.1-201ENST00000561102 201 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC091042.1-201ENST00000579213 173 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 MIR3667-201ENST00000581025 74 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC5.15□□□□□ -1.59
USP39Q53GS9 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
USP39Q53GS9 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 AC008745.1-201ENST00000604064 271 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 MEMO1P5-201ENST00000604810 406 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC090578.1-201ENST00000604955 591 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC005962.2-201ENST00000611427 652 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms