Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
USP41Q3LFD5 RLIMP1-201ENST00000339626 1680 ntBASIC4.51□□□□□ -1.69
USP41Q3LFD5 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP41Q3LFD5 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 RNU6-146P-201ENST00000384602 108 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 RPL21P65-201ENST00000406094 466 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 MIR1911-201ENST00000410783 80 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 PAICSP7-201ENST00000419829 962 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 SKP1P3-201ENST00000429280 487 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 MTATP6P17-201ENST00000431030 672 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC233982.1-201ENST00000451247 436 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 SLC25A15P5-201ENST00000508033 253 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC113347.3-201ENST00000509113 148 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 PPBPP1-201ENST00000510807 373 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 SMARCE1P4-201ENST00000523647 241 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC110743.1-201ENST00000584870 478 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC021749.1-201ENST00000604322 607 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC123768.4-201ENST00000616244 701 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 AC011330.2-201ENST00000621680 635 ntBASIC4.5□□□□□ -1.69
USP41Q3LFD5 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
USP41Q3LFD5 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
USP41Q3LFD5 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL356489.2-201ENST00000566968 3528 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL049737.1-201ENST00000413920 1403 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL512646.1-201ENST00000269395 1077 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL356320.2-201ENST00000417263 507 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 RPS20P1-201ENST00000434853 354 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 PTENP1-201ENST00000447117 1215 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 Z73417.1-201ENST00000447373 778 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC239809.1-201ENST00000450470 217 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AL139824.2-201ENST00000458731 1095 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 RPS29P19-201ENST00000479709 171 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 GAPDHP39-201ENST00000481866 979 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 UBA52P3-201ENST00000491303 382 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 RN7SL604P-201ENST00000492589 296 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC020593.1-201ENST00000507399 299 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 RPL7L1P13-201ENST00000511702 739 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 MTND4LP31-201ENST00000514859 294 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC008694.2-201ENST00000517591 306 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 LRRC34P1-201ENST00000542742 915 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC053481.4-201ENST00000583164 216 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC006130.2-201ENST00000586202 326 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC008759.1-201ENST00000589783 983 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC091488.1-201ENST00000604239 660 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC016877.3-201ENST00000606778 504 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.49□□□□□ -1.69
USP41Q3LFD5 AP004247.3-201ENST00000608682 624 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 AC024257.5-201ENST00000612739 531 ntBASIC4.49□□□□□ -1.69
USP41Q3LFD5 MIR6875-201ENST00000617506 72 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms