Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 OR4A15-201ENST00000314706 1035 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 RNU2-28P-201ENST00000410457 189 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 CYCSP46-201ENST00000423569 204 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC093698.1-201ENST00000423843 571 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL031736.2-201ENST00000426573 787 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 TMX2P1-201ENST00000436507 708 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL512286.1-201ENST00000439244 400 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 RPS26P56-201ENST00000444468 240 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 TRGVB-201ENST00000453257 471 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ZNF114P1-201ENST00000453500 292 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 RPS29P22-201ENST00000472363 168 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC010301.1-201ENST00000473936 355 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC008897.1-201ENST00000494006 347 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 GAPDHP56-201ENST00000506031 988 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 CBX3P3-201ENST00000508108 532 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL391156.1-201ENST00000554965 554 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 PCMTD1P2-201ENST00000565017 355 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC006362.1-201ENST00000567392 174 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 MIR4270-201ENST00000581799 70 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 KPNA2P3-201ENST00000584190 848 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC090181.2-201ENST00000602975 672 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 U73023.1-201ENST00000603134 700 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC020910.3-201ENST00000603701 874 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL121932.1-201ENST00000605542 214 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC104073.3-201ENST00000610942 955 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC092192.1-201ENST00000633154 1018 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC084035.1-201ENST00000634543 607 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AL731566.1-201ENST00000620490 1937 ntBASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
PTCHD3Q3KNS1 AC012618.3-205ENST00000637896 1496 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RNU6-374P-201ENST00000364146 108 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 OR5H15-201ENST00000383696 930 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 U3.35-201ENST00000408405 208 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RNU6-648P-201ENST00000410190 107 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 E2F6P2-201ENST00000420708 748 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AL512649.1-201ENST00000428997 581 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC023347.2-201ENST00000433994 462 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AL451139.1-201ENST00000434718 346 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 EEF1A1P1-201ENST00000447052 739 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AP000936.2-201ENST00000447151 681 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms