Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HSPG2P98160 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HSPG2P98160 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC1.96□□□□□ -2.1
HSPG2P98160 DPPA2P2-201ENST00000418220 897 ntBASIC1.96□□□□□ -2.1
HSPG2P98160 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC1.96□□□□□ -2.1
HSPG2P98160 snoU13.23-201ENST00000458863 104 ntBASIC1.96□□□□□ -2.1
HSPG2P98160 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC1.96□□□□□ -2.1
HSPG2P98160 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
HSPG2P98160 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC1.95□□□□□ -2.1
HSPG2P98160 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC1.95□□□□□ -2.1
HSPG2P98160 AC046144.1-201ENST00000478559 1853 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC1.95□□□□□ -2.1
HSPG2P98160 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 Z95331.1-201ENST00000623075 23112 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
HSPG2P98160 ANKRD30BP3-201ENST00000444850 1070 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AP000936.2-201ENST00000447151 681 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC1.95□□□□□ -2.1
HSPG2P98160 RPS27AP9-201ENST00000477681 438 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AC034159.1-201ENST00000513885 583 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
HSPG2P98160 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC1.95□□□□□ -2.1
HSPG2P98160 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC1.95□□□□□ -2.1
HSPG2P98160 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC1.95□□□□□ -2.1
HSPG2P98160 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC1.95□□□□□ -2.1
HSPG2P98160 OR51A3P-201ENST00000413596 924 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.95□□□□□ -2.1
HSPG2P98160 AC025181.1-201ENST00000477507 416 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 APOOP4-201ENST00000513530 597 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AC005798.1-201ENST00000513715 387 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC1.95□□□□□ -2.1
HSPG2P98160 AC007619.2-201ENST00000605743 379 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC1.95□□□□□ -2.1
HSPG2P98160 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
HSPG2P98160 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 IPO8P1-201ENST00000455509 3109 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AL592148.1-201ENST00000413568 445 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 RN7SL594P-201ENST00000470590 287 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 PCBP2P3-201ENST00000509726 843 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 MIR486-1-201ENST00000612171 68 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AC064859.1-201ENST00000624741 174 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
HSPG2P98160 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC1.95□□□□□ -2.1
HSPG2P98160 ASNSP1-201ENST00000518311 1939 ntBASIC1.95□□□□□ -2.1
HSPG2P98160 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HSPG2P98160 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC1.94□□□□□ -2.1
HSPG2P98160 METTL15P1-201ENST00000481421 1045 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC1.94□□□□□ -2.1
HSPG2P98160 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC1.94□□□□□ -2.1
HSPG2P98160 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HSPG2P98160 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
HSPG2P98160 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC1.94□□□□□ -2.1
HSPG2P98160 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.94□□□□□ -2.1
HSPG2P98160 RN7SKP199-201ENST00000410325 305 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC1.94□□□□□ -2.1
HSPG2P98160 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 IFNNP1-201ENST00000429219 553 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC1.94□□□□□ -2.1
HSPG2P98160 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC1.94□□□□□ -2.1
HSPG2P98160 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC1.94□□□□□ -2.1
HSPG2P98160 CYP4A43P-201ENST00000568156 121 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 MRPS35P3-201ENST00000603189 709 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 GMCL1P2-201ENST00000605230 823 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HSPG2P98160 AC063923.1-201ENST00000478982 1619 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.94□□□□□ -2.1
HSPG2P98160 NPM1P38-201ENST00000403835 865 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC1.94□□□□□ -2.1
HSPG2P98160 WASF1P1-201ENST00000447560 1131 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 NECAP1P2-201ENST00000455668 727 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 NPM1P29-201ENST00000483112 803 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
HSPG2P98160 AL121766.1-201ENST00000547436 487 ntBASIC1.94□□□□□ -2.1
HSPG2P98160 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC1.94□□□□□ -2.1
HSPG2P98160 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC1.94□□□□□ -2.1
HSPG2P98160 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HSPG2P98160 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HSPG2P98160 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms