Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC104651.2-201ENST00000447549 528 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AL354710.1-201ENST00000453641 246 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AP1S2P1-201ENST00000457344 379 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC093166.4-201ENST00000457867 318 ntBASIC5.42□□□□□ -1.54
RNF4P78317 RNU1-88P-201ENST00000459274 128 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC087879.1-201ENST00000474343 374 ntBASIC5.42□□□□□ -1.54
RNF4P78317 SNORD46.2-201ENST00000516021 102 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 AP000907.2-201ENST00000530827 353 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.42□□□□□ -1.54
RNF4P78317 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC5.42□□□□□ -1.54
RNF4P78317 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.42□□□□□ -1.54
RNF4P78317 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.42□□□□□ -1.54
RNF4P78317 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC5.42□□□□□ -1.54
RNF4P78317 AC018552.1-201ENST00000562099 811 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.42□□□□□ -1.54
RNF4P78317 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 AL355375.2-201ENST00000574825 175 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 AC020910.2-201ENST00000603635 610 ntBASIC5.42□□□□□ -1.54
RNF4P78317 AC233309.1-201ENST00000619522 751 ntBASIC5.42□□□□□ -1.54
RNF4P78317 RMST_7.1-201ENST00000621935 268 ntBASIC5.42□□□□□ -1.54
RNF4P78317 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.42□□□□□ -1.54
RNF4P78317 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.42□□□□□ -1.54
RNF4P78317 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.42□□□□□ -1.54
RNF4P78317 MIR1302-1-201ENST00000637932 143 ntBASIC5.42□□□□□ -1.54
RNF4P78317 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
RNF4P78317 AC105074.1-201ENST00000623380 3095 ntBASIC5.42□□□□□ -1.54
RNF4P78317 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
RNF4P78317 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
RNF4P78317 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 AC092447.10-201ENST00000620607 1652 ntBASIC5.41□□□□□ -1.54
RNF4P78317 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 NACAP2-201ENST00000318548 624 ntBASIC5.41□□□□□ -1.54
RNF4P78317 Y_RNA.67-201ENST00000362870 100 ntBASIC5.41□□□□□ -1.54
RNF4P78317 RNA5SP391-201ENST00000363456 119 ntBASIC5.41□□□□□ -1.54
RNF4P78317 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.41□□□□□ -1.54
RNF4P78317 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 MIR1-2-201ENST00000384961 85 ntBASIC5.41□□□□□ -1.54
RNF4P78317 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 RPL32P23-201ENST00000397237 405 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AL122016.1-201ENST00000403365 367 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AL590004.1-201ENST00000405321 300 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AL354719.1-201ENST00000406535 843 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.41□□□□□ -1.54
RNF4P78317 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 SNRPFP1-201ENST00000414761 252 ntBASIC5.41□□□□□ -1.54
RNF4P78317 MTCO3P12-201ENST00000416718 547 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.41□□□□□ -1.54
RNF4P78317 RPL31P45-201ENST00000419532 356 ntBASIC5.41□□□□□ -1.54
RNF4P78317 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 GPR143P-201ENST00000434155 205 ntBASIC5.41□□□□□ -1.54
RNF4P78317 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 FHP1-201ENST00000442741 703 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 AL445665.1-202ENST00000452436 324 ntBASIC5.41□□□□□ -1.54
RNF4P78317 APOOP2-201ENST00000461561 539 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC007998.1-201ENST00000474156 672 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AP000893.1-201ENST00000474462 794 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 RPL32P9-201ENST00000487963 407 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC005726.1-201ENST00000494679 427 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC026427.2-201ENST00000506228 536 ntBASIC5.41□□□□□ -1.54
RNF4P78317 SNORA70.20-201ENST00000516848 126 ntBASIC5.41□□□□□ -1.54
RNF4P78317 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.41□□□□□ -1.54
RNF4P78317 AP003072.1-201ENST00000531740 145 ntBASIC5.41□□□□□ -1.54
RNF4P78317 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
RNF4P78317 AL358913.1-201ENST00000554342 121 ntBASIC5.41□□□□□ -1.54
RNF4P78317 MIR4260-201ENST00000583107 67 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.41□□□□□ -1.54
RNF4P78317 AC010525.2-201ENST00000590920 195 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC023813.4-201ENST00000607580 580 ntBASIC5.41□□□□□ -1.54
RNF4P78317 BX323046.1-201ENST00000610145 535 ntBASIC5.41□□□□□ -1.54
RNF4P78317 AC079597.1-201ENST00000624306 508 ntBASIC5.41□□□□□ -1.54
RNF4P78317 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.41□□□□□ -1.54
RNF4P78317 CYP3A51P-201ENST00000633513 256 ntBASIC5.41□□□□□ -1.54
RNF4P78317 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
RNF4P78317 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
RNF4P78317 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.41□□□□□ -1.54
RNF4P78317 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
RNF4P78317 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
RNF4P78317 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
RNF4P78317 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
RNF4P78317 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.4□□□□□ -1.54
RNF4P78317 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
RNF4P78317 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
RNF4P78317 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.4□□□□□ -1.54
RNF4P78317 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms