Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC005539.1-201ENST00000443768 1479 ntBASIC3.73□□□□□ -1.81
NKX2-1P43699 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
NKX2-1P43699 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL356489.2-201ENST00000566968 3528 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
NKX2-1P43699 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 RNU1-130P-201ENST00000363930 160 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 SNORA74A-201ENST00000364089 198 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 RNU1-63P-201ENST00000383902 164 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 MIR93-201ENST00000385024 80 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 MIR708-201ENST00000390708 88 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 U3.30-201ENST00000391308 210 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 RNU2-42P-201ENST00000410697 113 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AL591848.1-201ENST00000413092 322 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC004552.1-201ENST00000419089 348 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC006960.1-201ENST00000419980 153 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL390023.1-201ENST00000428836 262 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL050321.1-201ENST00000432363 400 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 RHOT1P3-201ENST00000436571 331 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX2-1P43699 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC009963.2-201ENST00000453431 138 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 RPS26P3-201ENST00000470205 348 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC090543.2-201ENST00000483963 348 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC004057.1-201ENST00000485827 348 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC109462.1-201ENST00000491087 368 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC006499.3-201ENST00000506077 748 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 MRPS33P2-201ENST00000507850 322 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 TMEM248P1-201ENST00000510579 951 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC116353.3-201ENST00000511215 249 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 RNA5SP34-201ENST00000516887 130 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX2-1P43699 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC092470.1-201ENST00000546187 132 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC079171.1-201ENST00000568788 914 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 MIR4691-201ENST00000583764 85 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 MIR4999-201ENST00000585029 91 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC3.72□□□□□ -1.81
NKX2-1P43699 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 FAM27B-201ENST00000610601 213 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL603755.1-201ENST00000619504 163 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX2-1P43699 CU459211.1-201ENST00000635667 749 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
NKX2-1P43699 AL442639.1-201ENST00000625030 1899 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 IQCB2P-201ENST00000401788 1633 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.72□□□□□ -1.81
NKX2-1P43699 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 AC130650.2-201ENST00000618736 2403 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 A2MP1-204ENST00000566278 4130 ntBASIC3.72□□□□□ -1.81
NKX2-1P43699 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX2-1P43699 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.81
NKX2-1P43699 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
NKX2-1P43699 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX2-1P43699 AC135352.1-201ENST00000506173 1418 ntBASIC3.71□□□□□ -1.82
NKX2-1P43699 AC006971.1-201ENST00000407916 4486 ntBASIC3.71□□□□□ -1.82
NKX2-1P43699 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.71□□□□□ -1.82
NKX2-1P43699 NXPH1-205ENST00000602349 1953 ntBASIC3.71□□□□□ -1.82
NKX2-1P43699 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX2-1P43699 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NKX2-1P43699 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
NKX2-1P43699 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
NKX2-1P43699 SNORA51.1-201ENST00000363243 140 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms