Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HMGB3P9-201ENST00000441799 583 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 RPL32P28-201ENST00000443577 397 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 MTND2P25-201ENST00000449028 610 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL18A1P39060 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.14□□□□□ -1.75
COL18A1P39060 AC009812.2-201ENST00000517657 457 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL18A1P39060 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.14□□□□□ -1.75
COL18A1P39060 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL18A1P39060 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL18A1P39060 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL18A1P39060 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL18A1P39060 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
COL18A1P39060 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.13□□□□□ -1.75
COL18A1P39060 AC016696.1-201ENST00000446949 318 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.13□□□□□ -1.75
COL18A1P39060 RNU6-964P-201ENST00000516524 69 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.13□□□□□ -1.75
COL18A1P39060 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.13□□□□□ -1.75
COL18A1P39060 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC4.13□□□□□ -1.75
COL18A1P39060 CYP2C60P-201ENST00000566088 139 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 AC018552.3-201ENST00000567416 561 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 AC103881.1-201ENST00000603476 538 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 uc_338.32-201ENST00000615087 172 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 AC241377.1-201ENST00000619797 406 ntBASIC4.13□□□□□ -1.75
COL18A1P39060 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
COL18A1P39060 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
COL18A1P39060 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
COL18A1P39060 MIR448-201ENST00000362131 111 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 RNA5SP184-201ENST00000411071 108 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 RPL12P18-201ENST00000437175 325 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 RPS12P18-201ENST00000442381 270 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 RPS24P13-201ENST00000442520 397 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 Z99127.3-201ENST00000448158 395 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 MRPS31P2-201ENST00000451581 518 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 AL109933.2-201ENST00000452651 260 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 RPL31P50-201ENST00000471002 296 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 RPL5P16-201ENST00000471467 790 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 SNORA70.19-201ENST00000516717 90 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.12□□□□□ -1.75
COL18A1P39060 H3F3AP1-201ENST00000559984 334 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.12□□□□□ -1.75
COL18A1P39060 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.12□□□□□ -1.75
COL18A1P39060 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.12□□□□□ -1.75
COL18A1P39060 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.12□□□□□ -1.75
COL18A1P39060 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.12□□□□□ -1.75
COL18A1P39060 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
COL18A1P39060 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.12□□□□□ -1.75
COL18A1P39060 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL18A1P39060 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL18A1P39060 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL18A1P39060 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.12□□□□□ -1.75
COL18A1P39060 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.12□□□□□ -1.75
COL18A1P39060 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.12□□□□□ -1.75
COL18A1P39060 AC099506.2-201ENST00000623074 221 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL18A1P39060 AC090971.4-201ENST00000560291 1800 ntBASIC4.12□□□□□ -1.75
COL18A1P39060 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.11□□□□□ -1.75
COL18A1P39060 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 MIR30E-201ENST00000362104 92 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 U3.12-201ENST00000364498 214 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.11□□□□□ -1.75
COL18A1P39060 AL121890.1-201ENST00000435457 205 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 AC108938.1-201ENST00000451204 136 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.11□□□□□ -1.75
COL18A1P39060 HMGB1P3-201ENST00000502802 616 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 RNU1-143P-201ENST00000516296 146 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.11□□□□□ -1.75
COL18A1P39060 AC136601.2-201ENST00000604356 474 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 U1.23-201ENST00000610293 146 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 RNU1-68P-201ENST00000615382 146 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 CYCSP41-201ENST00000616920 296 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 U1.39-201ENST00000621562 146 ntBASIC4.11□□□□□ -1.75
COL18A1P39060 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.11□□□□□ -1.75
COL18A1P39060 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
COL18A1P39060 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL18A1P39060 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL18A1P39060 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
COL18A1P39060 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL18A1P39060 AL139281.1-201ENST00000422120 335 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.1□□□□□ -1.75
COL18A1P39060 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL18A1P39060 AC112492.1-201ENST00000449607 712 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.1□□□□□ -1.75
COL18A1P39060 TRBV8-2-201ENST00000475637 270 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.1□□□□□ -1.75
COL18A1P39060 HIGD1AP13-201ENST00000509878 289 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 AL512310.1-201ENST00000548639 172 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.1□□□□□ -1.75
COL18A1P39060 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.1□□□□□ -1.75
COL18A1P39060 HMGB1P6-201ENST00000569046 646 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.1□□□□□ -1.75
COL18A1P39060 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.1□□□□□ -1.75
COL18A1P39060 AC103858.2-201ENST00000621471 543 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms