Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 AC079949.2-201ENST00000617117 2933 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 AC007114.2-201ENST00000576014 4281 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 OR52B3P-201ENST00000314715 928 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 RNA5SP273-201ENST00000362484 113 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 Y_RNA.26-201ENST00000362539 101 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RNU6-562P-201ENST00000362731 107 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 Y_RNA.122-201ENST00000363331 96 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 MIR558-201ENST00000384920 94 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RNU2-20P-201ENST00000410425 191 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 OR2AT2P-201ENST00000413438 905 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AL929472.1-201ENST00000417484 429 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RPS15AP30-201ENST00000420976 390 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 USMG5P1-201ENST00000425964 177 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 RPS6P12-201ENST00000432491 726 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 MTATP6P16-201ENST00000434543 526 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.69□□□□□ -1.5
COL8A1P27658 IGKV1OR10-1-201ENST00000442306 329 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 PPIAP7-201ENST00000454070 489 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.69□□□□□ -1.5
COL8A1P27658 IGKV1OR22-5-201ENST00000458718 354 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RPS23P1-201ENST00000491662 432 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RPL23AP72-201ENST00000492447 435 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC5.69□□□□□ -1.5
COL8A1P27658 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.69□□□□□ -1.5
COL8A1P27658 RNU6-120P-201ENST00000516077 103 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RNA5SP503-201ENST00000517047 117 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 RNU1-54P-201ENST00000517181 120 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 EEF1B2P2-201ENST00000519625 676 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.69□□□□□ -1.5
COL8A1P27658 AP000620.1-201ENST00000527147 504 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.69□□□□□ -1.5
COL8A1P27658 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 AC092121.1-201ENST00000569452 202 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 MIR4701-201ENST00000583094 63 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 SS18L2P2-201ENST00000583960 235 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AC073657.2-201ENST00000605661 303 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 HMGB1P50-201ENST00000605814 607 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.69□□□□□ -1.5
COL8A1P27658 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL8A1P27658 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 AC011008.2-201ENST00000624866 3352 ntBASIC5.69□□□□□ -1.5
COL8A1P27658 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 AL133243.4-201ENST00000623116 3109 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
COL8A1P27658 MTCO1P24-201ENST00000515438 1558 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
COL8A1P27658 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 AL033543.1-201ENST00000623440 13454 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RNU6-1290P-201ENST00000362957 109 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 SNORA70.3-201ENST00000365075 132 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 SNORD50.2-201ENST00000365465 70 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RNU6-532P-201ENST00000384318 107 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 Y_RNA.473-201ENST00000384333 102 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RNU6-39P-201ENST00000384344 107 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 SNORD58.1-201ENST00000391313 66 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 DHFRP6-201ENST00000401776 268 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AL596448.1-201ENST00000415024 392 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.68□□□□□ -1.5
COL8A1P27658 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.68□□□□□ -1.5
COL8A1P27658 AC068533.1-201ENST00000418542 415 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 AL355433.1-201ENST00000422804 300 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms