Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RN7SKP122-201ENST00000515923 296 ntBASIC3.62□□□□□ -1.83
SDC1P18827 RN7SKP83-201ENST00000516512 178 ntBASIC3.62□□□□□ -1.83
SDC1P18827 IGJP1-201ENST00000522682 475 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 AC092851.1-201ENST00000535964 478 ntBASIC3.62□□□□□ -1.83
SDC1P18827 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC1P18827 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC1P18827 AC120057.2-201ENST00000571520 271 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC1P18827 AC141257.3-201ENST00000572906 215 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC126365.2-201ENST00000580630 379 ntBASIC3.62□□□□□ -1.83
SDC1P18827 VN1R88P-201ENST00000596787 292 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC015726.1-201ENST00000602353 681 ntBASIC3.62□□□□□ -1.83
SDC1P18827 OR6R2P-201ENST00000609216 300 ntBASIC3.62□□□□□ -1.83
SDC1P18827 BX323046.1-201ENST00000610145 535 ntBASIC3.62□□□□□ -1.83
SDC1P18827 MIR6758-201ENST00000620653 63 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC007275.1-201ENST00000621243 671 ntBASIC3.62□□□□□ -1.83
SDC1P18827 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC1P18827 MIR6830-201ENST00000636015 70 ntBASIC3.62□□□□□ -1.83
SDC1P18827 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
SDC1P18827 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC1P18827 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.61□□□□□ -1.83
SDC1P18827 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.61□□□□□ -1.83
SDC1P18827 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 RNU5B-4P-201ENST00000363508 111 ntBASIC3.61□□□□□ -1.83
SDC1P18827 RNU6-1293P-201ENST00000384077 107 ntBASIC3.61□□□□□ -1.83
SDC1P18827 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.61□□□□□ -1.83
SDC1P18827 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 SKP1P1-201ENST00000438081 489 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC105402.2-201ENST00000438503 358 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 HMGB1P48-201ENST00000446155 598 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AL050341.1-201ENST00000447743 313 ntBASIC3.61□□□□□ -1.83
SDC1P18827 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 MTCO3P20-201ENST00000454926 688 ntBASIC3.61□□□□□ -1.83
SDC1P18827 BX248409.1-201ENST00000455497 255 ntBASIC3.61□□□□□ -1.83
SDC1P18827 CDC42P1-201ENST00000456658 548 ntBASIC3.61□□□□□ -1.83
SDC1P18827 RNU7-140P-201ENST00000459546 60 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC092045.1-201ENST00000495716 1231 ntBASIC3.61□□□□□ -1.83
SDC1P18827 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.61□□□□□ -1.83
SDC1P18827 AC008885.2-201ENST00000509506 930 ntBASIC3.61□□□□□ -1.83
SDC1P18827 FTH1P21-201ENST00000512179 511 ntBASIC3.61□□□□□ -1.83
SDC1P18827 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 CBX3P5-201ENST00000552017 521 ntBASIC3.61□□□□□ -1.83
SDC1P18827 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 AC244505.7-201ENST00000599675 272 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AL392112.1-201ENST00000605115 829 ntBASIC3.61□□□□□ -1.83
SDC1P18827 SNORA62.6-201ENST00000606322 83 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC013468.1-201ENST00000608680 598 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC005156.1-201ENST00000613371 573 ntBASIC3.61□□□□□ -1.83
SDC1P18827 RNU6-156P-201ENST00000621869 107 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC244205.2-202ENST00000635781 342 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AL590396.4-201ENST00000636779 956 ntBASIC3.61□□□□□ -1.83
SDC1P18827 AC006927.2-201ENST00000639256 389 ntBASIC3.61□□□□□ -1.83
SDC1P18827 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SDC1P18827 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.61□□□□□ -1.83
SDC1P18827 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
SDC1P18827 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC1P18827 AC008725.1-201ENST00000605123 2263 ntBASIC3.6□□□□□ -1.83
SDC1P18827 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.6□□□□□ -1.83
SDC1P18827 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SDC1P18827 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SDC1P18827 RNU5B-1-201ENST00000363286 116 ntBASIC3.6□□□□□ -1.83
SDC1P18827 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.6□□□□□ -1.83
SDC1P18827 U1.1-201ENST00000384101 164 ntBASIC3.6□□□□□ -1.83
SDC1P18827 MIR525-201ENST00000384978 85 ntBASIC3.6□□□□□ -1.83
SDC1P18827 PRRC2CP1-201ENST00000404428 159 ntBASIC3.6□□□□□ -1.83
SDC1P18827 AL355143.1-201ENST00000407101 841 ntBASIC3.6□□□□□ -1.83
SDC1P18827 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC1P18827 FAR2P4-202ENST00000425399 584 ntBASIC3.6□□□□□ -1.83
SDC1P18827 MOB1AP1-201ENST00000430903 535 ntBASIC3.6□□□□□ -1.83
SDC1P18827 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC1P18827 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.6□□□□□ -1.83
SDC1P18827 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC1P18827 AL645931.1-201ENST00000439737 410 ntBASIC3.6□□□□□ -1.83
SDC1P18827 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.6□□□□□ -1.83
SDC1P18827 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.6□□□□□ -1.83
SDC1P18827 RPS27P23-201ENST00000487608 251 ntBASIC3.6□□□□□ -1.83
SDC1P18827 HMGB1P38-201ENST00000490557 577 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms