Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 SMG1P7-201ENST00000565246 2704 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 MUC2-202ENST00000613187 4845 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 Y_RNA.72-201ENST00000362894 103 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 RNU4-7P-201ENST00000364758 141 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 RNU6-767P-201ENST00000384132 107 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 RNU6-1160P-201ENST00000384546 104 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 SNORD65.1-201ENST00000390889 71 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 Z97832.1-201ENST00000402490 328 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 MIR1271-201ENST00000408537 86 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 MIR1282-201ENST00000408865 101 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 ERMN-204ENST00000409925 556 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC007738.1-201ENST00000413892 348 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 USP9YP36-201ENST00000424581 829 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 MTCO3P21-201ENST00000430791 643 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 OR52B5P-201ENST00000435337 951 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 UBE2FP3-201ENST00000436366 524 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 SDCBPP1-201ENST00000440192 890 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 snoU109.1-201ENST00000459339 135 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC090638.1-201ENST00000498296 909 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 NIFKP7-201ENST00000503365 834 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 SCARNA16.4-201ENST00000516956 187 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 SCARNA20.4-201ENST00000516969 131 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 TRMT10BP1-201ENST00000519377 943 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC007424.1-203ENST00000554613 687 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AL512360.1-201ENST00000555346 234 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC137800.2-201ENST00000574375 120 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC006116.10-201ENST00000591836 581 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC091488.1-201ENST00000604239 660 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AL451049.1-201ENST00000608672 497 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AP001506.1-201ENST00000615444 211 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 MTND5P16-201ENST00000460269 1703 ntBASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC39Q9UFE4 Y_RNA.67-201ENST00000362870 100 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 RNU5E-5P-201ENST00000365379 116 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 RNA5SP88-201ENST00000365560 109 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 Y_RNA.409-201ENST00000383990 98 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 SNRPEP2-201ENST00000397592 279 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 RNU6-575P-201ENST00000411326 105 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 RPS26P13-201ENST00000419030 330 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC018630.2-202ENST00000422992 927 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 FAM96AP1-201ENST00000430879 482 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 YWHAEP5-201ENST00000431545 765 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AL389925.1-201ENST00000432257 728 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 MTND4P14-201ENST00000435799 1354 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 MTND5P3-201ENST00000438536 1800 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 HMGN1P36-201ENST00000446623 298 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC005002.1-201ENST00000447458 540 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AL672138.1-201ENST00000450604 1015 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 RPL38P1-201ENST00000460914 211 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 HMGB1P29-201ENST00000505659 499 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC093677.1-201ENST00000514414 678 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AP005597.4-201ENST00000526762 229 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 OR6C73P-201ENST00000546432 358 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 ATP5F1P7-201ENST00000567330 760 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AL355375.2-201ENST00000574825 175 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC011712.1-201ENST00000588959 234 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 AC020914.6-201ENST00000594327 272 ntBASIC6.12□□□□□ -1.43
CCDC39Q9UFE4 VN1R80P-201ENST00000597126 338 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms