Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 AC007390.1-201ENST00000415722 356 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC068533.1-201ENST00000418542 415 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AL138799.3-201ENST00000438968 350 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC092451.1-201ENST00000480211 153 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC026979.1-201ENST00000492525 396 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AL035404.1-201ENST00000497982 568 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 RNU2-27P-201ENST00000516185 142 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 DUXAP6-201ENST00000553858 601 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 MIR5187-201ENST00000583479 76 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AL392112.1-201ENST00000605115 829 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AC110792.4-201ENST00000609843 298 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VAPAQ9P0L0 AF127577.6-201ENST00000623352 2191 ntBASIC3.38□□□□□ -1.87
VAPAQ9P0L0 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 RNA5SP283-201ENST00000365604 119 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 SNORA70E-201ENST00000384492 135 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC010385.1-201ENST00000412374 256 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 HMGN2P21-201ENST00000447764 270 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 RPS3AP46-201ENST00000448352 682 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 HMGB3P8-201ENST00000449709 577 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AL133162.1-201ENST00000463228 453 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC010401.1-201ENST00000463867 348 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AL161747.1-201ENST00000480068 358 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC104687.1-201ENST00000485829 412 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC078817.1-201ENST00000492623 435 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC111193.1-201ENST00000504097 155 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 PTGES3P3-201ENST00000511479 482 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 POLR2KP1-201ENST00000553226 168 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 BNIP3P7-201ENST00000605641 516 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AL023583.1-201ENST00000607518 1143 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AC005344.1-201ENST00000613391 459 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 MIR6758-201ENST00000620653 63 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AL354798.1-201ENST00000622505 329 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 AL133383.2-201ENST00000622958 2336 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 GABPAP-201ENST00000419271 1356 ntBASIC3.37□□□□□ -1.87
VAPAQ9P0L0 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VAPAQ9P0L0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.36□□□□□ -1.87
VAPAQ9P0L0 ZNF826P-207ENST00000622273 1910 ntBASIC3.36□□□□□ -1.87
VAPAQ9P0L0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.36□□□□□ -1.87
VAPAQ9P0L0 AP004289.2-201ENST00000444413 1457 ntBASIC3.36□□□□□ -1.87
VAPAQ9P0L0 RIOK3P1-201ENST00000418778 1528 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms