Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 RPL21P5-201ENST00000554662 472 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC233280.2-201ENST00000603917 1070 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AP000860.1-201ENST00000605250 559 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AL512329.2-201ENST00000607350 548 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC104010.1-201ENST00000616889 150 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC009318.4-201ENST00000620496 486 ntBASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM39Q9HCM9 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL161781.1-201ENST00000354277 403 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RN7SKP226-201ENST00000364912 300 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RNU6-878P-201ENST00000384578 110 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 SNORD115.1-201ENST00000391109 76 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 HSPA8P15-201ENST00000401676 786 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RPL35AP24-201ENST00000413846 330 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL133482.1-201ENST00000415988 498 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL355433.1-201ENST00000422804 300 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 GLRXP1-201ENST00000423261 334 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC093655.2-201ENST00000425735 631 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 NPM1P18-201ENST00000434232 732 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AP000542.1-201ENST00000448473 371 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL035090.1-201ENST00000454835 332 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 BTF3P5-201ENST00000457252 467 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 GYG1P1-201ENST00000460864 698 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 COPS8P2-201ENST00000473228 627 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RPL5P22-201ENST00000480199 884 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RN7SL30P-201ENST00000488416 306 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RN7SL629P-201ENST00000489622 285 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RPL9P6-201ENST00000492764 598 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RNU6-314P-201ENST00000516574 104 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RN7SKP82-201ENST00000516786 223 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RNU6-1003P-201ENST00000517099 105 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 MTCO2P4-201ENST00000517968 247 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AP003467.2-201ENST00000520175 319 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 MIR1269B-201ENST00000580405 75 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 MIR4512-201ENST00000583257 77 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL606834.2-201ENST00000602954 668 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL513477.2-201ENST00000607858 568 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 FAM157B-203ENST00000639350 358 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 AL078621.3-201ENST00000623707 2042 ntBASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 RARSP1-201ENST00000542842 1418 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms