Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NUP88Q99567 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NUP88Q99567 ZNF736P9Y-201ENST00000439586 1345 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
NUP88Q99567 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NUP88Q99567 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC068533.2-201ENST00000411872 306 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC062016.2-201ENST00000420950 676 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NUP88Q99567 AC012519.1-201ENST00000424588 610 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 RPS20P1-201ENST00000434853 354 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 MTCYBP3-201ENST00000445588 1137 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 ZNF736P5Y-201ENST00000451173 805 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC104685.1-201ENST00000502445 371 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 MTCO3P28-201ENST00000513351 515 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 RNY4P37-201ENST00000516225 96 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 AL356057.1-201ENST00000533798 831 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.34□□□□□ -1.55
NUP88Q99567 AL590392.1-201ENST00000604960 446 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AC005962.2-201ENST00000611427 652 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AL354976.1-201ENST00000613843 387 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AC122133.1-201ENST00000613964 233 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AF246928.1-201ENST00000623768 87 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AC004943.3-201ENST00000624116 600 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 AC092184.1-201ENST00000625042 715 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 MIR6830-201ENST00000636015 70 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
NUP88Q99567 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
NUP88Q99567 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
NUP88Q99567 MAPK10-320ENST00000641462 6696 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
NUP88Q99567 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC135352.1-201ENST00000506173 1418 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
NUP88Q99567 OR5BR1P-201ENST00000524992 1330 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NUP88Q99567 RNU6-1293P-201ENST00000384077 107 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 Z98745.1-201ENST00000402553 494 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AL049693.1-201ENST00000402760 611 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AL078604.1-201ENST00000404609 466 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
NUP88Q99567 MIR1284-201ENST00000408337 120 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 CEACAMP8-201ENST00000413902 580 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC234779.1-201ENST00000425910 285 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AL158073.1-201ENST00000426848 1104 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 RSL24D1P6-201ENST00000426934 401 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 AL445433.1-201ENST00000457507 257 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 NIP7P2-201ENST00000485801 544 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NUP88Q99567 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC111000.2-201ENST00000507775 550 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 HMGB1P28-201ENST00000507778 552 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
NUP88Q99567 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC5.33□□□□□ -1.56
NUP88Q99567 ATP1B1P1-201ENST00000509767 915 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 HMGB3P13-201ENST00000511263 607 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC5.33□□□□□ -1.56
NUP88Q99567 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC090502.2-201ENST00000549267 280 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 AGGF1P8-201ENST00000562979 1000 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 ATP5J2P6-201ENST00000565203 266 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AC012435.1-202ENST00000568772 240 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC091946.2-201ENST00000606105 291 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 RNU6-156P-201ENST00000621869 107 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
NUP88Q99567 AC098679.5-201ENST00000624394 571 ntBASIC5.33□□□□□ -1.56
NUP88Q99567 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.33□□□□□ -1.56
NUP88Q99567 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms