Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PPP1R2P5-201ENST00000457256 603 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 RNU6-333P-201ENST00000459117 107 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 SIAH1P1-201ENST00000479411 923 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 HMGN1P16-201ENST00000508308 283 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 RN7SKP256-201ENST00000517201 314 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC103783.1-201ENST00000520506 373 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AP001858.2-201ENST00000536213 601 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 NCAPGP2-201ENST00000557911 754 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC005498.1-201ENST00000592125 465 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AL591167.1-201ENST00000607321 456 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AL355974.3-201ENST00000617383 467 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AL603758.1-201ENST00000618654 241 ntBASIC4.84□□□□□ -1.63
CCDC140Q96MF4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC140Q96MF4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC140Q96MF4 Z95114.1-201ENST00000624264 14574 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 GDA-209ENST00000545168 5362 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 TAB3P1-202ENST00000452645 1634 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AL121886.1-201ENST00000358609 435 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RNU1-49P-201ENST00000363468 159 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RN7SKP237-201ENST00000364663 301 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 SNORA43.1-201ENST00000364863 140 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 MIR153-1-201ENST00000384914 90 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RNU6-754P-201ENST00000391166 107 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AL109755.1-201ENST00000401791 649 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RNU2-29P-201ENST00000410423 189 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RPL21P24-201ENST00000413752 448 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 HMGA1P8-201ENST00000414130 321 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RPL7AP51-201ENST00000422016 760 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RPL21P133-201ENST00000443666 476 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AL031584.1-201ENST00000447169 754 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 CEACAMP6-201ENST00000452007 574 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RNU6-329P-201ENST00000459618 107 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC094085.1-201ENST00000468914 584 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 NDUFB5P1-201ENST00000508134 564 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RNU6-277P-201ENST00000516272 106 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AL161713.1-201ENST00000555538 145 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 MT1CP-201ENST00000567054 174 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 MIR4703-201ENST00000577728 79 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC078795.3-201ENST00000602913 472 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC009779.8-202ENST00000607990 932 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 MIR6780B-201ENST00000610307 79 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC104237.2-201ENST00000612456 443 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC025034.2-201ENST00000623264 286 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC140Q96MF4 CYP4F35P-202ENST00000636121 390 ntBASIC4.83□□□□□ -1.64
CCDC140Q96MF4 AC010325.3-201ENST00000641084 394 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms