Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.58□□□□□ -2
FOXA3P55318 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC2.58□□□□□ -2
FOXA3P55318 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.58□□□□□ -2
FOXA3P55318 MIR4474-201ENST00000579189 78 ntBASIC2.58□□□□□ -2
FOXA3P55318 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC2.58□□□□□ -2
FOXA3P55318 AL591034.3-201ENST00000605511 685 ntBASIC2.58□□□□□ -2
FOXA3P55318 AC012213.4-201ENST00000606457 354 ntBASIC2.58□□□□□ -2
FOXA3P55318 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC2.58□□□□□ -2
FOXA3P55318 AC112200.1-201ENST00000625015 234 ntBASIC2.58□□□□□ -2
FOXA3P55318 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
FOXA3P55318 ELL2P4-201ENST00000446870 1376 ntBASIC2.58□□□□□ -2
FOXA3P55318 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
FOXA3P55318 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
FOXA3P55318 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC2.58□□□□□ -2
FOXA3P55318 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 SNORA70E-201ENST00000384492 135 ntBASIC2.57□□□□□ -2
FOXA3P55318 RPL21P3-201ENST00000395517 478 ntBASIC2.57□□□□□ -2
FOXA3P55318 RPS4XP9-201ENST00000405151 780 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC007899.1-201ENST00000412776 775 ntBASIC2.57□□□□□ -2
FOXA3P55318 AL356968.1-201ENST00000416622 474 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC006960.1-201ENST00000419980 153 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC009480.2-201ENST00000422916 432 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC068287.1-201ENST00000430283 295 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC009969.1-201ENST00000438726 172 ntBASIC2.57□□□□□ -2
FOXA3P55318 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC2.57□□□□□ -2
FOXA3P55318 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.57□□□□□ -2
FOXA3P55318 AC097262.1-201ENST00000452559 548 ntBASIC2.57□□□□□ -2
FOXA3P55318 ARPC3P2-201ENST00000457786 533 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC2.57□□□□□ -2
FOXA3P55318 AC089999.1-201ENST00000460336 374 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC146507.2-201ENST00000460608 476 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC091179.1-201ENST00000461606 579 ntBASIC2.57□□□□□ -2
FOXA3P55318 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 AC093267.1-201ENST00000489176 961 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC093278.1-201ENST00000494700 600 ntBASIC2.57□□□□□ -2
FOXA3P55318 RPL30P11-201ENST00000495304 339 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.57□□□□□ -2
FOXA3P55318 PTGES3P3-201ENST00000511479 482 ntBASIC2.57□□□□□ -2
FOXA3P55318 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.57□□□□□ -2
FOXA3P55318 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC2.57□□□□□ -2
FOXA3P55318 RANP9-201ENST00000519957 271 ntBASIC2.57□□□□□ -2
FOXA3P55318 IGKV2D-19-201ENST00000523346 262 ntBASIC2.57□□□□□ -2
FOXA3P55318 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.57□□□□□ -2
FOXA3P55318 STX3-204ENST00000530221 534 ntTSL 5 BASIC2.57□□□□□ -2
FOXA3P55318 CYCSP30-201ENST00000546447 172 ntBASIC2.57□□□□□ -2
FOXA3P55318 SYF2P1-201ENST00000550658 413 ntBASIC2.57□□□□□ -2
FOXA3P55318 OR4H12P-201ENST00000556269 907 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC051619.2-201ENST00000559063 397 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC2.57□□□□□ -2
FOXA3P55318 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC2.57□□□□□ -2
FOXA3P55318 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC2.57□□□□□ -2
FOXA3P55318 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
FOXA3P55318 FP236240.3-201ENST00000623061 327 ntBASIC2.57□□□□□ -2
FOXA3P55318 AC090506.2-201ENST00000624521 419 ntBASIC2.57□□□□□ -2
FOXA3P55318 RFC1-217ENST00000639695 867 ntTSL 5 BASIC2.57□□□□□ -2
FOXA3P55318 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.57□□□□□ -2
FOXA3P55318 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC2.57□□□□□ -2
FOXA3P55318 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.57□□□□□ -2
FOXA3P55318 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 AC032011.1-201ENST00000611703 1549 ntBASIC2.57□□□□□ -2
FOXA3P55318 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
FOXA3P55318 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 AC117529.2-201ENST00000512159 2068 ntBASIC2.56□□□□□ -2
FOXA3P55318 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 Y_RNA.62-201ENST00000362840 99 ntBASIC2.56□□□□□ -2
FOXA3P55318 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.56□□□□□ -2
FOXA3P55318 OR6C69P-201ENST00000394268 893 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC240504.1-201ENST00000395709 845 ntBASIC2.56□□□□□ -2
FOXA3P55318 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.56□□□□□ -2
FOXA3P55318 AL139247.1-201ENST00000422768 325 ntBASIC2.56□□□□□ -2
FOXA3P55318 AL591419.1-201ENST00000427423 339 ntBASIC2.56□□□□□ -2
FOXA3P55318 AL353705.1-201ENST00000433468 480 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC073143.1-201ENST00000436316 395 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.56□□□□□ -2
FOXA3P55318 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC2.56□□□□□ -2
FOXA3P55318 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 RPS29P33-201ENST00000456717 146 ntBASIC2.56□□□□□ -2
FOXA3P55318 RNU7-27P-201ENST00000459281 62 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.56□□□□□ -2
FOXA3P55318 AC007686.1-201ENST00000488511 463 ntBASIC2.56□□□□□ -2
FOXA3P55318 RN7SL323P-201ENST00000494712 295 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC2.56□□□□□ -2
FOXA3P55318 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.56□□□□□ -2
FOXA3P55318 RNU6-319P-201ENST00000516025 108 ntBASIC2.56□□□□□ -2
FOXA3P55318 TBCA-206ENST00000518338 551 ntTSL 2 BASIC2.56□□□□□ -2
FOXA3P55318 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms