Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CCDC75P1-201ENST00000469247 791 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AC104689.1-201ENST00000473356 768 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AC015724.1-201ENST00000478577 156 ntBASIC3.87□□□□□ -1.79
SOX3P41225 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 AC020699.1-201ENST00000505161 445 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX3P41225 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX3P41225 RNA5SP315-201ENST00000516340 116 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RN7SKP265-201ENST00000516448 223 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RN7SKP21-201ENST00000516503 220 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RNA5SP312-201ENST00000517068 116 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX3P41225 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.87□□□□□ -1.79
SOX3P41225 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX3P41225 AC007224.1-201ENST00000564410 144 ntBASIC3.87□□□□□ -1.79
SOX3P41225 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX3P41225 AL035411.2-201ENST00000604022 421 ntBASIC3.87□□□□□ -1.79
SOX3P41225 AL445435.1-201ENST00000604232 665 ntBASIC3.87□□□□□ -1.79
SOX3P41225 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 ZYXP1-201ENST00000617638 118 ntBASIC3.87□□□□□ -1.79
SOX3P41225 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 AC015908.5-201ENST00000623289 343 ntBASIC3.87□□□□□ -1.79
SOX3P41225 OR1S1-201ENST00000624470 978 ntBASIC3.87□□□□□ -1.79
SOX3P41225 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 AL355578.1-201ENST00000607405 1328 ntBASIC3.87□□□□□ -1.79
SOX3P41225 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX3P41225 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 SGO1P1-201ENST00000603525 1447 ntBASIC3.87□□□□□ -1.79
SOX3P41225 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX3P41225 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX3P41225 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX3P41225 RNU1-13P-201ENST00000384499 162 ntBASIC3.86□□□□□ -1.79
SOX3P41225 MIR16-1-201ENST00000385271 89 ntBASIC3.86□□□□□ -1.79
SOX3P41225 MTCO2P31-201ENST00000402702 684 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AL079342.2-201ENST00000403367 482 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AL136310.1-201ENST00000404926 654 ntBASIC3.86□□□□□ -1.79
SOX3P41225 RN7SKP33-201ENST00000410942 340 ntBASIC3.86□□□□□ -1.79
SOX3P41225 RNU4-22P-201ENST00000411058 166 ntBASIC3.86□□□□□ -1.79
SOX3P41225 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 RBMY1KP-201ENST00000423480 476 ntBASIC3.86□□□□□ -1.79
SOX3P41225 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 OR4C10P-201ENST00000434991 931 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 AC112492.1-201ENST00000449607 712 ntBASIC3.86□□□□□ -1.79
SOX3P41225 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX3P41225 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX3P41225 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.86□□□□□ -1.79
SOX3P41225 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.86□□□□□ -1.79
SOX3P41225 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.86□□□□□ -1.79
SOX3P41225 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX3P41225 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX3P41225 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 AL442163.2-201ENST00000553912 710 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AC022655.2-201ENST00000577280 318 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX3P41225 BPTFP1-201ENST00000579209 492 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AP000238.1-201ENST00000608759 426 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AC103858.2-201ENST00000621471 543 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AC006963.1-201ENST00000624003 1052 ntBASIC3.86□□□□□ -1.79
SOX3P41225 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX3P41225 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX3P41225 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX3P41225 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
SOX3P41225 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SOX3P41225 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SOX3P41225 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SOX3P41225 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SOX3P41225 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SOX3P41225 AC000367.1-201ENST00000452711 1766 ntBASIC3.85□□□□□ -1.79
SOX3P41225 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SOX3P41225 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
SOX3P41225 Y_RNA.472-201ENST00000384322 102 ntBASIC3.85□□□□□ -1.79
SOX3P41225 ZNF603P-201ENST00000405613 487 ntBASIC3.85□□□□□ -1.79
SOX3P41225 OR51A3P-201ENST00000413596 924 ntBASIC3.85□□□□□ -1.79
SOX3P41225 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.85□□□□□ -1.79
SOX3P41225 AC108032.1-201ENST00000416706 207 ntBASIC3.85□□□□□ -1.79
SOX3P41225 RPS3AP37-201ENST00000419176 745 ntBASIC3.85□□□□□ -1.79
SOX3P41225 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.85□□□□□ -1.79
SOX3P41225 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.85□□□□□ -1.79
SOX3P41225 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms