Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.18□□□□□ -1.74
COL18A1P39060 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.18□□□□□ -1.74
COL18A1P39060 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.18□□□□□ -1.74
COL18A1P39060 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.18□□□□□ -1.74
COL18A1P39060 AL390838.2-201ENST00000602394 274 ntBASIC4.18□□□□□ -1.74
COL18A1P39060 AC096644.4-201ENST00000563417 2912 ntBASIC4.18□□□□□ -1.74
COL18A1P39060 OR5BR1P-201ENST00000524992 1330 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 RIOK3P1-201ENST00000418778 1528 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL18A1P39060 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL18A1P39060 HMGB3P18-201ENST00000406327 590 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AC011242.1-201ENST00000433596 1158 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 LDHBP3-201ENST00000514909 822 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.17□□□□□ -1.74
COL18A1P39060 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.17□□□□□ -1.74
COL18A1P39060 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.17□□□□□ -1.74
COL18A1P39060 AC099489.2-201ENST00000574976 260 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.17□□□□□ -1.74
COL18A1P39060 AC244517.3-201ENST00000616254 1235 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AL137790.1-201ENST00000634283 177 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
COL18A1P39060 AC006484.1-201ENST00000435086 1884 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL18A1P39060 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL18A1P39060 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL18A1P39060 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.17□□□□□ -1.74
COL18A1P39060 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.17□□□□□ -1.74
COL18A1P39060 SNORA18.3-201ENST00000384122 132 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AC069540.1-201ENST00000446320 988 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AC073587.1-201ENST00000447093 876 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AC117440.1-201ENST00000474107 571 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.17□□□□□ -1.74
COL18A1P39060 PCBP2P3-201ENST00000509726 843 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 AL353684.1-201ENST00000622677 1120 ntBASIC4.17□□□□□ -1.74
COL18A1P39060 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL18A1P39060 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL18A1P39060 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.16□□□□□ -1.74
COL18A1P39060 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.16□□□□□ -1.74
COL18A1P39060 RPL7P8-201ENST00000411964 730 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.16□□□□□ -1.74
COL18A1P39060 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.16□□□□□ -1.74
COL18A1P39060 RPL7P59-201ENST00000447700 943 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 ELOCP23-201ENST00000452014 332 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.16□□□□□ -1.74
COL18A1P39060 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL18A1P39060 RPL7P47-201ENST00000497299 556 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL18A1P39060 AC107934.2-201ENST00000518653 310 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 AC116158.1-201ENST00000560231 2129 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 OR1AB1P-201ENST00000585564 761 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.16□□□□□ -1.74
COL18A1P39060 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.16□□□□□ -1.74
COL18A1P39060 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL18A1P39060 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL18A1P39060 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.16□□□□□ -1.74
COL18A1P39060 AP003122.5-201ENST00000527668 3766 ntBASIC4.16□□□□□ -1.74
COL18A1P39060 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL18A1P39060 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
COL18A1P39060 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.15□□□□□ -1.74
COL18A1P39060 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.15□□□□□ -1.74
COL18A1P39060 DNAJC19P1-201ENST00000455312 319 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 RPL23AP67-201ENST00000465341 474 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 RPL7L1P13-201ENST00000511702 739 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 AC010306.1-201ENST00000523223 1117 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.15□□□□□ -1.74
COL18A1P39060 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL18A1P39060 AP002404.1-201ENST00000532005 451 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 MIR4319-201ENST00000577285 85 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 AC009948.4-201ENST00000604692 675 ntBASIC4.15□□□□□ -1.74
COL18A1P39060 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.74
COL18A1P39060 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
COL18A1P39060 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.75
COL18A1P39060 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.15□□□□□ -1.75
COL18A1P39060 CEP170P1-201ENST00000502249 4587 ntBASIC4.15□□□□□ -1.75
COL18A1P39060 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC4.15□□□□□ -1.75
COL18A1P39060 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
COL18A1P39060 XGY1-201ENST00000381172 446 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.14□□□□□ -1.75
COL18A1P39060 AC093156.1-201ENST00000440382 670 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC4.14□□□□□ -1.75
COL18A1P39060 AC010307.1-201ENST00000467206 836 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 NPM1P29-201ENST00000483112 803 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.14□□□□□ -1.75
COL18A1P39060 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 MIR4738-201ENST00000579134 87 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 VN1R90P-201ENST00000595717 726 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 PRELID3BP8-201ENST00000604148 295 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 AL049844.2-201ENST00000604280 628 ntBASIC4.14□□□□□ -1.75
COL18A1P39060 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.14□□□□□ -1.75
COL18A1P39060 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
COL18A1P39060 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.14□□□□□ -1.75
COL18A1P39060 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
COL18A1P39060 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
COL18A1P39060 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
COL18A1P39060 DPPA2P2-201ENST00000418220 897 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms