Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 KCTD9P3-201ENST00000434597 1169 ntBASIC4□□□□□ -1.77
PTPN4P29074 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4□□□□□ -1.77
PTPN4P29074 AP000949.1-201ENST00000438328 629 ntBASIC4□□□□□ -1.77
PTPN4P29074 HMGB1P48-201ENST00000446155 598 ntBASIC4□□□□□ -1.77
PTPN4P29074 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4□□□□□ -1.77
PTPN4P29074 MTCO3P16-201ENST00000454456 754 ntBASIC4□□□□□ -1.77
PTPN4P29074 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
PTPN4P29074 MTCO2P9-201ENST00000503214 694 ntBASIC4□□□□□ -1.77
PTPN4P29074 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4□□□□□ -1.77
PTPN4P29074 AC020593.1-201ENST00000507399 299 ntBASIC4□□□□□ -1.77
PTPN4P29074 PTGES3P3-201ENST00000511479 482 ntBASIC4□□□□□ -1.77
PTPN4P29074 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTPN4P29074 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4□□□□□ -1.77
PTPN4P29074 AC083923.1-201ENST00000523708 376 ntBASIC4□□□□□ -1.77
PTPN4P29074 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4□□□□□ -1.77
PTPN4P29074 OR4R2P-201ENST00000530815 597 ntBASIC4□□□□□ -1.77
PTPN4P29074 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTPN4P29074 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4□□□□□ -1.77
PTPN4P29074 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4□□□□□ -1.77
PTPN4P29074 MIR4286-201ENST00000580651 93 ntBASIC4□□□□□ -1.77
PTPN4P29074 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4□□□□□ -1.77
PTPN4P29074 VN1R79P-201ENST00000593540 513 ntBASIC4□□□□□ -1.77
PTPN4P29074 AL034351.1-201ENST00000605288 668 ntBASIC4□□□□□ -1.77
PTPN4P29074 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4□□□□□ -1.77
PTPN4P29074 MIR8084-201ENST00000614105 89 ntBASIC4□□□□□ -1.77
PTPN4P29074 AC073569.3-201ENST00000619055 682 ntBASIC4□□□□□ -1.77
PTPN4P29074 U7.8-201ENST00000619968 63 ntBASIC4□□□□□ -1.77
PTPN4P29074 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4□□□□□ -1.77
PTPN4P29074 AC017104.5-201ENST00000637647 639 ntBASIC4□□□□□ -1.77
PTPN4P29074 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
PTPN4P29074 FAM157B-203ENST00000639350 358 ntBASIC4□□□□□ -1.77
PTPN4P29074 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
PTPN4P29074 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTPN4P29074 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4□□□□□ -1.77
PTPN4P29074 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
PTPN4P29074 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4□□□□□ -1.77
PTPN4P29074 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4□□□□□ -1.77
PTPN4P29074 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4□□□□□ -1.77
PTPN4P29074 AC008725.1-201ENST00000605123 2263 ntBASIC4□□□□□ -1.77
PTPN4P29074 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
PTPN4P29074 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC007685.1-201ENST00000329806 452 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 RNU6-1339P-201ENST00000363574 91 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 RNA5SP130-201ENST00000364431 114 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.99□□□□□ -1.77
PTPN4P29074 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 ATP5F1P4-201ENST00000397288 746 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 HMGB3P18-201ENST00000406327 590 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 PTGES3P2-201ENST00000407942 482 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 RNU4-27P-201ENST00000410889 139 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 RPL30P2-201ENST00000414021 291 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 USP9YP7-201ENST00000436723 430 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC092809.1-201ENST00000441469 474 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 RPL21P89-201ENST00000444021 467 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC044797.1-201ENST00000445744 679 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AL162151.2-201ENST00000448875 158 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 USP9YP32-201ENST00000452432 430 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC008379.1-201ENST00000463655 464 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 RPS29P19-201ENST00000479709 171 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC004069.2-201ENST00000505438 1114 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 AC108064.1-201ENST00000513791 460 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 MTND4LP31-201ENST00000514859 294 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 RN7SKP96-201ENST00000516948 297 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.99□□□□□ -1.77
PTPN4P29074 MTND1P36-201ENST00000522384 936 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.99□□□□□ -1.77
PTPN4P29074 AL133457.1-201ENST00000564251 987 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.99□□□□□ -1.77
PTPN4P29074 MIR3908-201ENST00000579798 126 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 Z82195.1-201ENST00000604558 398 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AL158211.2-201ENST00000607282 395 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 AL163051.2-201ENST00000618976 735 ntBASIC3.99□□□□□ -1.77
PTPN4P29074 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.77
PTPN4P29074 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.99□□□□□ -1.77
PTPN4P29074 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
PTPN4P29074 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
PTPN4P29074 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
PTPN4P29074 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
PTPN4P29074 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms