Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC012669.1-201ENST00000603209 283 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 MZT1P2-201ENST00000604387 248 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 OR6R2P-201ENST00000609216 300 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC5.71□□□□□ -1.5
COL8A1P27658 AL080312.2-201ENST00000613001 630 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 FAM27E2-201ENST00000619668 403 ntBASIC5.71□□□□□ -1.5
COL8A1P27658 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
COL8A1P27658 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC5.71□□□□□ -1.5
COL8A1P27658 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.71□□□□□ -1.5
COL8A1P27658 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL8A1P27658 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC005839.1-201ENST00000624148 3213 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 AL359976.1-201ENST00000418655 3528 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 DDX18P4-201ENST00000511690 1966 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 RNA5SP110-201ENST00000362638 115 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 Y_RNA.64-201ENST00000362845 102 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RNU6-81P-201ENST00000365608 104 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RNU6-1029P-201ENST00000384109 107 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RPL24P7-201ENST00000399435 453 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 POLHP1-201ENST00000411806 470 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC094019.1-201ENST00000434678 472 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC012075.1-201ENST00000436549 580 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AL031663.1-201ENST00000437445 219 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC004383.1-201ENST00000438135 289 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC114755.4-201ENST00000439114 443 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC093156.1-201ENST00000440382 670 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RPS7P5-201ENST00000441482 581 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.7□□□□□ -1.5
COL8A1P27658 AL139109.1-201ENST00000455491 297 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 SNX18P26-201ENST00000458433 740 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RPS29P26-201ENST00000477483 171 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RN7SL705P-201ENST00000481678 294 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RPL19P11-201ENST00000495944 589 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 PRMT5P1-201ENST00000514351 598 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 SNORA25.11-201ENST00000515935 105 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 RNA5SP362-201ENST00000516048 118 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC135001.1-201ENST00000544546 283 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC128657.1-201ENST00000549459 145 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 LSM3P2-201ENST00000551246 273 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC025884.1-201ENST00000556034 378 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC233702.7-202ENST00000582941 211 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC092747.3-201ENST00000603769 301 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AL157899.1-201ENST00000604110 936 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AL138825.1-201ENST00000618587 192 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.7□□□□□ -1.5
COL8A1P27658 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
COL8A1P27658 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC073488.3-201ENST00000631611 778 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC009237.3-203ENST00000442128 3551 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 ZNF101P1-201ENST00000435701 1720 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 AL442639.1-201ENST00000625030 1899 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 JPX-212ENST00000639185 9658 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL8A1P27658 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 TPTE2P4-201ENST00000258589 1605 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AC097714.1-201ENST00000511272 1647 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC5.7□□□□□ -1.5
COL8A1P27658 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL8A1P27658 AC006213.6-201ENST00000623722 4179 ntBASIC5.7□□□□□ -1.5
COL8A1P27658 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL8A1P27658 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL8A1P27658 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC5.69□□□□□ -1.5
COL8A1P27658 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms