Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4□□□□□ -1.77
COL5A3P25940 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL5A3P25940 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL5A3P25940 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL5A3P25940 RNU6-301P-201ENST00000384277 107 ntBASIC3.99□□□□□ -1.77
COL5A3P25940 Z99127.3-201ENST00000448158 395 ntBASIC3.99□□□□□ -1.77
COL5A3P25940 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL5A3P25940 AC010306.1-201ENST00000523223 1117 ntBASIC3.99□□□□□ -1.77
COL5A3P25940 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.99□□□□□ -1.77
COL5A3P25940 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 CEP170P1-201ENST00000502249 4587 ntBASIC3.99□□□□□ -1.77
COL5A3P25940 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL5A3P25940 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.99□□□□□ -1.77
COL5A3P25940 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.99□□□□□ -1.77
COL5A3P25940 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
COL5A3P25940 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL5A3P25940 AC012078.1-201ENST00000405035 1646 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AL391417.1-201ENST00000404100 426 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 RNA5SP296-201ENST00000410523 111 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AC117440.1-201ENST00000474107 571 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL5A3P25940 PCBP2P3-201ENST00000509726 843 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 MIR4319-201ENST00000577285 85 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.98□□□□□ -1.77
COL5A3P25940 MIR622-201ENST00000638396 96 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.98□□□□□ -1.77
COL5A3P25940 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL5A3P25940 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.98□□□□□ -1.77
COL5A3P25940 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL5A3P25940 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.98□□□□□ -1.77
COL5A3P25940 RPL5P18-201ENST00000406671 891 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.98□□□□□ -1.77
COL5A3P25940 HMGB1P16-201ENST00000447155 540 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.98□□□□□ -1.77
COL5A3P25940 AC010307.1-201ENST00000467206 836 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AC021205.2-201ENST00000480069 347 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.98□□□□□ -1.77
COL5A3P25940 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.98□□□□□ -1.77
COL5A3P25940 AC007998.5-201ENST00000622938 237 ntBASIC3.98□□□□□ -1.77
COL5A3P25940 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL5A3P25940 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 RIOK3P1-201ENST00000418778 1528 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AC011503.2-201ENST00000594230 1500 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 SNORA18.3-201ENST00000384122 132 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AL031679.1-201ENST00000400616 525 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 RN7SKP220-201ENST00000410611 288 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.97□□□□□ -1.77
COL5A3P25940 AC004552.1-201ENST00000419089 348 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AL160175.1-201ENST00000428124 247 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.97□□□□□ -1.77
COL5A3P25940 AC093156.1-201ENST00000440382 670 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 HMGB3P9-201ENST00000441799 583 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.97□□□□□ -1.77
COL5A3P25940 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.97□□□□□ -1.77
COL5A3P25940 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.97□□□□□ -1.77
COL5A3P25940 HMGB1P19-201ENST00000517578 577 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.97□□□□□ -1.77
COL5A3P25940 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.97□□□□□ -1.77
COL5A3P25940 VN1R90P-201ENST00000595717 726 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 AC009948.4-201ENST00000604692 675 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.97□□□□□ -1.77
COL5A3P25940 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 MTND4P26-201ENST00000415971 1359 ntBASIC3.97□□□□□ -1.77
COL5A3P25940 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL5A3P25940 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.96□□□□□ -1.77
COL5A3P25940 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.96□□□□□ -1.77
COL5A3P25940 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A3P25940 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
COL5A3P25940 DNAJC19P1-201ENST00000455312 319 ntBASIC3.96□□□□□ -1.78
COL5A3P25940 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.96□□□□□ -1.78
COL5A3P25940 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.96□□□□□ -1.78
COL5A3P25940 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.96□□□□□ -1.78
COL5A3P25940 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC3.96□□□□□ -1.78
COL5A3P25940 DPRXP4-201ENST00000578053 568 ntBASIC3.96□□□□□ -1.78
COL5A3P25940 OR1AB1P-201ENST00000585564 761 ntBASIC3.96□□□□□ -1.78
COL5A3P25940 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.96□□□□□ -1.78
COL5A3P25940 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A3P25940 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A3P25940 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.96□□□□□ -1.78
COL5A3P25940 AP003122.5-201ENST00000527668 3766 ntBASIC3.96□□□□□ -1.78
COL5A3P25940 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
COL5A3P25940 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL5A3P25940 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
COL5A3P25940 OR5J1P-201ENST00000313544 939 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 RNA5SP184-201ENST00000411071 108 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 RPL7P8-201ENST00000411964 730 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AL160275.2-201ENST00000412010 394 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AL513174.1-201ENST00000423182 629 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AC112492.1-201ENST00000449607 712 ntBASIC3.95□□□□□ -1.78
COL5A3P25940 AC233982.1-201ENST00000451247 436 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms