Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A1P20908 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A1P20908 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.25□□□□□ -1.89
COL5A1P20908 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A1P20908 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
COL5A1P20908 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
COL5A1P20908 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
COL5A1P20908 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 CEP170P1-201ENST00000502249 4587 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.24□□□□□ -1.89
COL5A1P20908 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.24□□□□□ -1.89
COL5A1P20908 AL353705.1-201ENST00000433468 480 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 AC107083.1-201ENST00000439643 279 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 RPL32P28-201ENST00000443577 397 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 RPL7P59-201ENST00000447700 943 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A1P20908 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A1P20908 AC018442.3-201ENST00000523025 183 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 AC087276.1-201ENST00000529659 480 ntBASIC3.24□□□□□ -1.89
COL5A1P20908 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A1P20908 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.24□□□□□ -1.89
COL5A1P20908 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
COL5A1P20908 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL5A1P20908 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.24□□□□□ -1.89
COL5A1P20908 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
COL5A1P20908 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.23□□□□□ -1.89
COL5A1P20908 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 HMGB3P9-201ENST00000441799 583 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC133473.1-201ENST00000455173 299 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 RN7SL863P-201ENST00000462370 296 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 BNIP3P38-201ENST00000601117 544 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 RNVU1-4-201ENST00000612985 164 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC105227.2-201ENST00000615075 605 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AL158062.1-201ENST00000619632 745 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.23□□□□□ -1.89
COL5A1P20908 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.23□□□□□ -1.89
COL5A1P20908 AC073073.2-201ENST00000609827 2578 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC027287.1-201ENST00000553115 1453 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
COL5A1P20908 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 RNU6-7-201ENST00000364784 107 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 RNU6-8-201ENST00000365467 107 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 LAP3P1-201ENST00000403648 294 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 SMC4P1-201ENST00000414479 527 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AL353678.1-201ENST00000422735 741 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.23□□□□□ -1.89
COL5A1P20908 RPS26P47-201ENST00000427219 348 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 SKP1P1-201ENST00000438081 489 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC006028.1-201ENST00000438379 402 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.23□□□□□ -1.89
COL5A1P20908 SEPT7P3-201ENST00000455017 621 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 SUMO2P4-201ENST00000504193 276 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL5A1P20908 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.23□□□□□ -1.89
COL5A1P20908 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.23□□□□□ -1.89
COL5A1P20908 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.23□□□□□ -1.89
COL5A1P20908 RPL12P50-201ENST00000603116 116 ntBASIC3.23□□□□□ -1.89
COL5A1P20908 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL5A1P20908 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A1P20908 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A1P20908 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A1P20908 MIR708-201ENST00000390708 88 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 SNORA68.2-201ENST00000391263 128 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A1P20908 ATP5C1P1-201ENST00000441945 895 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.22□□□□□ -1.89
COL5A1P20908 AL133477.1-201ENST00000457472 514 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL5A1P20908 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A1P20908 OR4R3P-201ENST00000525084 838 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 AC113192.3-201ENST00000529152 742 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A1P20908 DUXAP6-201ENST00000553858 601 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 AL157394.1-201ENST00000562983 1224 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A1P20908 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.22□□□□□ -1.89
COL5A1P20908 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.22□□□□□ -1.89
COL5A1P20908 AL590240.3-201ENST00000621416 943 ntBASIC3.22□□□□□ -1.89
COL5A1P20908 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.22□□□□□ -1.89
COL5A1P20908 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.22□□□□□ -1.89
COL5A1P20908 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms