Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.17□□□□□ -1.74
MSH3P20585 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.17□□□□□ -1.74
MSH3P20585 FAM3C2-201ENST00000312214 681 ntBASIC4.17□□□□□ -1.74
MSH3P20585 RNA5SP388-201ENST00000362584 119 ntBASIC4.17□□□□□ -1.74
MSH3P20585 RNU4-92P-201ENST00000363783 136 ntBASIC4.17□□□□□ -1.74
MSH3P20585 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 RNU6-317P-201ENST00000384031 107 ntBASIC4.17□□□□□ -1.74
MSH3P20585 RNU6-146P-201ENST00000384602 108 ntBASIC4.17□□□□□ -1.74
MSH3P20585 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.17□□□□□ -1.74
MSH3P20585 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.17□□□□□ -1.74
MSH3P20585 AC009965.2-201ENST00000425328 970 ntBASIC4.17□□□□□ -1.74
MSH3P20585 OR5AW1P-201ENST00000426334 1006 ntBASIC4.17□□□□□ -1.74
MSH3P20585 RAC1P8-201ENST00000427086 527 ntBASIC4.17□□□□□ -1.74
MSH3P20585 HIGD1AP12-201ENST00000427832 281 ntBASIC4.17□□□□□ -1.74
MSH3P20585 COX6B1P7-201ENST00000430845 235 ntBASIC4.17□□□□□ -1.74
MSH3P20585 ELOCP18-201ENST00000434209 337 ntBASIC4.17□□□□□ -1.74
MSH3P20585 MTCYBP31-201ENST00000438855 1122 ntBASIC4.17□□□□□ -1.74
MSH3P20585 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 Z77249.1-201ENST00000444622 1175 ntBASIC4.17□□□□□ -1.74
MSH3P20585 TPT1P12-201ENST00000448968 492 ntBASIC4.17□□□□□ -1.74
MSH3P20585 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.17□□□□□ -1.74
MSH3P20585 PPIAP21-201ENST00000464473 501 ntBASIC4.17□□□□□ -1.74
MSH3P20585 AC011037.1-201ENST00000483964 558 ntBASIC4.17□□□□□ -1.74
MSH3P20585 BNIP3P41-201ENST00000503774 571 ntBASIC4.17□□□□□ -1.74
MSH3P20585 BOLA3P3-201ENST00000505182 232 ntBASIC4.17□□□□□ -1.74
MSH3P20585 SNORA31.9-201ENST00000516429 84 ntBASIC4.17□□□□□ -1.74
MSH3P20585 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.17□□□□□ -1.74
MSH3P20585 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
MSH3P20585 MTATP6P15-201ENST00000527233 835 ntBASIC4.17□□□□□ -1.74
MSH3P20585 AC105233.3-201ENST00000531125 744 ntBASIC4.17□□□□□ -1.74
MSH3P20585 MTCO2P15-201ENST00000532655 656 ntBASIC4.17□□□□□ -1.74
MSH3P20585 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.17□□□□□ -1.74
MSH3P20585 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 AL161729.3-201ENST00000603533 673 ntBASIC4.17□□□□□ -1.74
MSH3P20585 MTND3P19-201ENST00000603825 345 ntBASIC4.17□□□□□ -1.74
MSH3P20585 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.17□□□□□ -1.74
MSH3P20585 U6.48-201ENST00000618523 106 ntBASIC4.17□□□□□ -1.74
MSH3P20585 MIR7702-201ENST00000621931 59 ntBASIC4.17□□□□□ -1.74
MSH3P20585 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.17□□□□□ -1.74
MSH3P20585 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.17□□□□□ -1.74
MSH3P20585 AL592437.2-201ENST00000421655 2434 ntBASIC4.17□□□□□ -1.74
MSH3P20585 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.17□□□□□ -1.74
MSH3P20585 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.17□□□□□ -1.74
MSH3P20585 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
MSH3P20585 OR11H5P-202ENST00000641612 1325 ntBASIC4.17□□□□□ -1.74
MSH3P20585 PNPT1P2-201ENST00000456768 2050 ntBASIC4.17□□□□□ -1.74
MSH3P20585 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
MSH3P20585 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 MTND4P10-201ENST00000446199 1363 ntBASIC4.16□□□□□ -1.74
MSH3P20585 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 CYP1D1P-201ENST00000416662 1433 ntBASIC4.16□□□□□ -1.74
MSH3P20585 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 AL161909.1-201ENST00000397390 712 ntBASIC4.16□□□□□ -1.74
MSH3P20585 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 AL079342.2-201ENST00000403367 482 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AL590290.1-201ENST00000405336 380 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AL603766.1-201ENST00000407763 664 ntBASIC4.16□□□□□ -1.74
MSH3P20585 SNORA11C-201ENST00000408532 129 ntBASIC4.16□□□□□ -1.74
MSH3P20585 Z75741.2-201ENST00000417272 1167 ntBASIC4.16□□□□□ -1.74
MSH3P20585 HMGB1P49-201ENST00000418882 569 ntBASIC4.16□□□□□ -1.74
MSH3P20585 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 BTF3P10-201ENST00000433415 495 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.16□□□□□ -1.74
MSH3P20585 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 AC234064.1-201ENST00000436312 247 ntBASIC4.16□□□□□ -1.74
MSH3P20585 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 RPL23AP89-201ENST00000439324 255 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC104306.1-201ENST00000449702 371 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.16□□□□□ -1.74
MSH3P20585 AC010618.1-201ENST00000469924 477 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 AL161747.1-201ENST00000480068 358 ntBASIC4.16□□□□□ -1.74
MSH3P20585 RPL23AP44-201ENST00000482216 473 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AC073522.1-201ENST00000483312 377 ntBASIC4.16□□□□□ -1.74
MSH3P20585 AF213884.1-201ENST00000488102 463 ntBASIC4.16□□□□□ -1.74
MSH3P20585 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH3P20585 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC4.16□□□□□ -1.74
MSH3P20585 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 HMGB1P23-201ENST00000518743 568 ntBASIC4.16□□□□□ -1.74
MSH3P20585 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.16□□□□□ -1.74
MSH3P20585 SMARCE1P4-201ENST00000523647 241 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms