Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SDC1P18827 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
SDC1P18827 AL133412.1-201ENST00000380194 2992 ntBASIC3.63□□□□□ -1.83
SDC1P18827 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 AC073055.1-201ENST00000456901 1621 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC1P18827 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SDC1P18827 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC1P18827 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SDC1P18827 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 RNU1-87P-201ENST00000363727 170 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RNA5SP97-201ENST00000365006 84 ntBASIC3.63□□□□□ -1.83
SDC1P18827 U6.112-201ENST00000384129 70 ntBASIC3.63□□□□□ -1.83
SDC1P18827 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 DNAJC19P6-201ENST00000401853 280 ntBASIC3.63□□□□□ -1.83
SDC1P18827 HNRNPDP2-201ENST00000406475 478 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RNA5SP317-201ENST00000410176 116 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RNA5SP311-201ENST00000411290 116 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.63□□□□□ -1.83
SDC1P18827 PRELID3BP11-201ENST00000414230 479 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AL807761.1-201ENST00000417622 171 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 RPS26P40-201ENST00000435209 294 ntBASIC3.63□□□□□ -1.83
SDC1P18827 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC1P18827 OR51B8P-201ENST00000449892 769 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.63□□□□□ -1.83
SDC1P18827 RPS7P7-201ENST00000463499 571 ntBASIC3.63□□□□□ -1.83
SDC1P18827 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 AC026979.1-201ENST00000492525 396 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 MTND3P3-201ENST00000505004 126 ntBASIC3.63□□□□□ -1.83
SDC1P18827 PRELID3BP4-201ENST00000515476 571 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RNA5SP315-201ENST00000516340 116 ntBASIC3.63□□□□□ -1.83
SDC1P18827 MIR2114-201ENST00000516645 80 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RN7SKP209-201ENST00000516888 304 ntBASIC3.63□□□□□ -1.83
SDC1P18827 RNA5SP312-201ENST00000517068 116 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC1P18827 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC1P18827 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC1P18827 AC099489.2-201ENST00000574976 260 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AC090666.1-201ENST00000578241 445 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC1P18827 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC1P18827 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 AC068620.3-201ENST00000602749 560 ntBASIC3.63□□□□□ -1.83
SDC1P18827 BNIP3P31-201ENST00000604515 566 ntBASIC3.63□□□□□ -1.83
SDC1P18827 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC1P18827 MIR6500-201ENST00000622700 86 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AL138955.1-201ENST00000622881 1040 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AC112484.5-201ENST00000624189 228 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AC103798.2-201ENST00000624292 632 ntBASIC3.63□□□□□ -1.83
SDC1P18827 AF001550.2-201ENST00000636643 217 ntBASIC3.63□□□□□ -1.83
SDC1P18827 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
SDC1P18827 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SDC1P18827 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 MTCO1P6-201ENST00000481192 1384 ntBASIC3.63□□□□□ -1.83
SDC1P18827 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC1P18827 AC046144.1-201ENST00000478559 1853 ntBASIC3.62□□□□□ -1.83
SDC1P18827 CR381670.1-201ENST00000624291 1693 ntBASIC3.62□□□□□ -1.83
SDC1P18827 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
SDC1P18827 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
SDC1P18827 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SDC1P18827 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 AL512646.1-201ENST00000269395 1077 ntBASIC3.62□□□□□ -1.83
SDC1P18827 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SDC1P18827 SNORA70C-201ENST00000384538 135 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC1P18827 RNU6-77P-201ENST00000410554 91 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 HIGD1AP12-201ENST00000427832 281 ntBASIC3.62□□□□□ -1.83
SDC1P18827 RPL37P1-201ENST00000432310 284 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC023347.2-201ENST00000433994 462 ntBASIC3.62□□□□□ -1.83
SDC1P18827 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC1P18827 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC1P18827 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC1P18827 AC008280.2-201ENST00000455473 307 ntBASIC3.62□□□□□ -1.83
SDC1P18827 MTND2P39-201ENST00000457230 764 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC126121.1-201ENST00000482313 553 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC108941.1-201ENST00000502853 530 ntBASIC3.62□□□□□ -1.83
SDC1P18827 AC093801.2-201ENST00000503966 1050 ntBASIC3.62□□□□□ -1.83
SDC1P18827 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SDC1P18827 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms