Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GAPDHP39-201ENST00000481866 979 ntBASIC3.23□□□□□ -1.89
VCANP13611 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.23□□□□□ -1.89
VCANP13611 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.23□□□□□ -1.89
VCANP13611 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.23□□□□□ -1.89
VCANP13611 MIR7154-201ENST00000620673 73 ntBASIC3.23□□□□□ -1.89
VCANP13611 Z95331.1-201ENST00000623075 23112 ntBASIC3.23□□□□□ -1.89
VCANP13611 LINC02471-203ENST00000641941 4752 ntBASIC3.23□□□□□ -1.89
VCANP13611 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC3.23□□□□□ -1.89
VCANP13611 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 AC112198.2-201ENST00000426589 6996 ntBASIC3.23□□□□□ -1.89
VCANP13611 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.23□□□□□ -1.89
VCANP13611 AL049874.4-201ENST00000557593 255 ntBASIC3.23□□□□□ -1.89
VCANP13611 MIR4498-201ENST00000577599 66 ntBASIC3.23□□□□□ -1.89
VCANP13611 MIR4648-201ENST00000580107 72 ntBASIC3.23□□□□□ -1.89
VCANP13611 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC3.23□□□□□ -1.89
VCANP13611 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.23□□□□□ -1.89
VCANP13611 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
VCANP13611 JKAMPP1-201ENST00000413804 919 ntBASIC3.23□□□□□ -1.89
VCANP13611 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.23□□□□□ -1.89
VCANP13611 HMGN2P3-201ENST00000433603 273 ntBASIC3.23□□□□□ -1.89
VCANP13611 HMGN2P5-201ENST00000436882 273 ntBASIC3.23□□□□□ -1.89
VCANP13611 AP000936.2-201ENST00000447151 681 ntBASIC3.23□□□□□ -1.89
VCANP13611 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.23□□□□□ -1.89
VCANP13611 RN7SL594P-201ENST00000470590 287 ntBASIC3.23□□□□□ -1.89
VCANP13611 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.23□□□□□ -1.89
VCANP13611 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 SNORD67-201ENST00000390833 111 ntBASIC3.22□□□□□ -1.89
VCANP13611 GSTM3P2-201ENST00000412746 530 ntBASIC3.22□□□□□ -1.89
VCANP13611 SEPT7P8-201ENST00000413308 775 ntBASIC3.22□□□□□ -1.89
VCANP13611 RPS24P13-201ENST00000442520 397 ntBASIC3.22□□□□□ -1.89
VCANP13611 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.22□□□□□ -1.89
VCANP13611 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.22□□□□□ -1.89
VCANP13611 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.22□□□□□ -1.89
VCANP13611 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.22□□□□□ -1.89
VCANP13611 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
VCANP13611 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.22□□□□□ -1.89
VCANP13611 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 MIR22-201ENST00000362190 85 ntBASIC3.22□□□□□ -1.89
VCANP13611 IL6-203ENST00000401651 539 ntTSL 2 BASIC3.22□□□□□ -1.89
VCANP13611 Y_RNA.595-201ENST00000410403 105 ntBASIC3.22□□□□□ -1.89
VCANP13611 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.22□□□□□ -1.89
VCANP13611 AL356968.1-201ENST00000416622 474 ntBASIC3.22□□□□□ -1.89
VCANP13611 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.22□□□□□ -1.89
VCANP13611 FAM103A2P-201ENST00000444122 354 ntBASIC3.22□□□□□ -1.89
VCANP13611 COX6CP8-201ENST00000522620 226 ntBASIC3.22□□□□□ -1.89
VCANP13611 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.22□□□□□ -1.89
VCANP13611 AC027176.1-201ENST00000560204 514 ntBASIC3.22□□□□□ -1.89
VCANP13611 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.22□□□□□ -1.89
VCANP13611 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC3.22□□□□□ -1.89
VCANP13611 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.22□□□□□ -1.89
VCANP13611 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.22□□□□□ -1.89
VCANP13611 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VCANP13611 RN7SKP56-201ENST00000410513 331 ntBASIC3.21□□□□□ -1.89
VCANP13611 AL645937.1-202ENST00000421799 937 ntBASIC3.21□□□□□ -1.89
VCANP13611 TRBV12-2-201ENST00000489763 344 ntBASIC3.21□□□□□ -1.89
VCANP13611 AL121766.1-201ENST00000547436 487 ntBASIC3.21□□□□□ -1.89
VCANP13611 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.21□□□□□ -1.89
VCANP13611 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.21□□□□□ -1.9
VCANP13611 MIR499A-201ENST00000384903 122 ntBASIC3.21□□□□□ -1.9
VCANP13611 MIR9-1-201ENST00000385198 89 ntBASIC3.21□□□□□ -1.9
VCANP13611 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.21□□□□□ -1.9
VCANP13611 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.21□□□□□ -1.9
VCANP13611 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.21□□□□□ -1.9
VCANP13611 MTCYBP14-201ENST00000457471 715 ntBASIC3.21□□□□□ -1.9
VCANP13611 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.21□□□□□ -1.9
VCANP13611 SYT14P1-202ENST00000600441 1448 ntBASIC3.21□□□□□ -1.9
VCANP13611 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.21□□□□□ -1.9
VCANP13611 GDA-209ENST00000545168 5362 ntTSL 2 BASIC3.21□□□□□ -1.9
VCANP13611 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VCANP13611 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VCANP13611 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC3.21□□□□□ -1.9
VCANP13611 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
VCANP13611 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VCANP13611 RN7SKP192-201ENST00000411291 327 ntBASIC3.21□□□□□ -1.9
VCANP13611 HMGB3P12-201ENST00000438745 556 ntBASIC3.21□□□□□ -1.9
VCANP13611 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VCANP13611 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
VCANP13611 AC019072.1-201ENST00000604535 1551 ntBASIC3.2□□□□□ -1.9
VCANP13611 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
VCANP13611 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC3.2□□□□□ -1.9
VCANP13611 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.2□□□□□ -1.9
VCANP13611 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.2□□□□□ -1.9
VCANP13611 NPM1P17-201ENST00000479221 602 ntBASIC3.2□□□□□ -1.9
VCANP13611 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC3.2□□□□□ -1.9
VCANP13611 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.2□□□□□ -1.9
VCANP13611 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.2□□□□□ -1.9
VCANP13611 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms