Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 DEFB109D-201ENST00000529497 240 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC105233.3-201ENST00000531125 744 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXD4P09016 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 AGGF1P8-201ENST00000562979 1000 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXD4P09016 MIR4444-1-201ENST00000581696 74 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 RN7SL600P-201ENST00000581811 299 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 MIR4444-2-201ENST00000584390 74 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AL160237.3-201ENST00000604114 1013 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AL445435.1-201ENST00000604232 665 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC018618.2-201ENST00000604770 446 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC012603.1-201ENST00000606424 528 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 Z98200.1-201ENST00000607298 470 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AL157392.4-201ENST00000609756 345 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 AC022079.2-201ENST00000619739 566 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.81□□□□□ -1.8
HOXD4P09016 AC116563.2-201ENST00000624751 535 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD4P09016 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD4P09016 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD4P09016 Z82217.1-201ENST00000625157 8149 ntBASIC3.81□□□□□ -1.8
HOXD4P09016 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD4P09016 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD4P09016 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
HOXD4P09016 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXD4P09016 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD4P09016 RNU1-15P-201ENST00000353977 144 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 MIR142-201ENST00000384835 87 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 HMGB1P13-201ENST00000406019 642 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 RPL31P52-201ENST00000407532 367 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 RN7SKP56-201ENST00000410513 331 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 RN7SKP159-201ENST00000410657 292 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD4P09016 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD4P09016 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
HOXD4P09016 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 RPL7P2-201ENST00000427639 268 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 HMGB3P5-201ENST00000428894 612 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AC006946.1-201ENST00000429106 328 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AL031663.1-201ENST00000437445 219 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 TPTE2P3-201ENST00000441562 1189 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXD4P09016 VN1R34P-201ENST00000447387 883 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD4P09016 RN7SL542P-201ENST00000467147 294 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AC114322.1-201ENST00000506771 926 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 RNA5SP519-201ENST00000516480 119 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD4P09016 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD4P09016 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXD4P09016 AC006064.5-201ENST00000541782 248 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD4P09016 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXD4P09016 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXD4P09016 RPP40P2-201ENST00000603596 712 ntBASIC3.8□□□□□ -1.8
HOXD4P09016 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
HOXD4P09016 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD4P09016 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
HOXD4P09016 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXD4P09016 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXD4P09016 AC006042.3-201ENST00000454684 1469 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
HOXD4P09016 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD4P09016 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXD4P09016 RNU6-317P-201ENST00000384031 107 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 MIR670-201ENST00000390142 98 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 ANAPC10P1-201ENST00000395991 556 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AC097374.1-203ENST00000400783 485 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 MIR1179-201ENST00000408703 91 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD4P09016 AC073335.1-201ENST00000427776 363 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 ETF1P3-201ENST00000430422 1160 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD4P09016 MTND1P26-201ENST00000440488 538 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL031313.1-201ENST00000448435 256 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL162151.2-201ENST00000448875 158 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD4P09016 TPMTP4-201ENST00000450749 678 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 AC010683.1-201ENST00000473673 378 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AC091959.2-201ENST00000477363 321 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD4P09016 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD4P09016 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXD4P09016 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD4P09016 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXD4P09016 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 AC053481.3-201ENST00000577881 843 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AC053481.4-201ENST00000583164 216 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms