Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 U8.11-201ENST00000384699 133 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 U8.12-201ENST00000384701 133 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 RPL31P45-201ENST00000419532 356 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 PNRC2P1-201ENST00000423940 420 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 AL035246.1-201ENST00000433554 1255 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 UBDP1-202ENST00000457888 382 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 U8.18-201ENST00000459285 133 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.11□□□□□ -1.75
CLDN3O15551 AC008494.2-201ENST00000514544 370 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 RNA5SP208-201ENST00000516156 78 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 RN7SKP234-201ENST00000517173 224 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.11□□□□□ -1.75
CLDN3O15551 RFPL1S-203ENST00000539579 330 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.11□□□□□ -1.75
CLDN3O15551 AP001033.2-201ENST00000609701 1003 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 MIR6864-201ENST00000617935 70 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 HPVC1-201ENST00000629899 1198 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
CLDN3O15551 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
CLDN3O15551 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 MTCO1P14-201ENST00000441695 1559 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN3O15551 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN3O15551 RNU6-1005P-201ENST00000384519 107 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 RN7SKP56-201ENST00000410513 331 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 TCEA1P2-201ENST00000420496 906 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 CYP4F29P-201ENST00000420685 446 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 FAM204CP-201ENST00000424489 642 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN3O15551 HMGB1P48-201ENST00000446155 598 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC068135.1-201ENST00000446164 246 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 HMGB1P16-201ENST00000447155 540 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC006480.1-201ENST00000449887 378 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.1□□□□□ -1.75
CLDN3O15551 SNRPGP5-201ENST00000456003 220 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 SNORD108-201ENST00000459332 71 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.1□□□□□ -1.75
CLDN3O15551 IGHV3-32-201ENST00000519182 355 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.1□□□□□ -1.75
CLDN3O15551 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.1□□□□□ -1.75
CLDN3O15551 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 LINC00557-201ENST00000563184 1279 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 AC090312.2-201ENST00000582687 378 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 VN1R79P-201ENST00000593540 513 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 AC020914.4-201ENST00000597690 277 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC125494.3-201ENST00000602759 455 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC025946.2-201ENST00000603398 234 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AL049634.3-201ENST00000604968 457 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AL391497.1-201ENST00000608671 547 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC105429.2-201ENST00000610567 517 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 uc_338.32-201ENST00000615087 172 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC079684.1-201ENST00000621405 437 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.1□□□□□ -1.75
CLDN3O15551 ZNF33CP-201ENST00000432492 2030 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN3O15551 MTCO1P18-201ENST00000455518 1419 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN3O15551 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CLDN3O15551 MAPK10-373ENST00000641983 6772 ntBASIC4.1□□□□□ -1.75
CLDN3O15551 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
CLDN3O15551 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.09□□□□□ -1.75
CLDN3O15551 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLDN3O15551 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLDN3O15551 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CLDN3O15551 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CLDN3O15551 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CLDN3O15551 AC007685.1-201ENST00000329806 452 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 RNA5SP424-201ENST00000390988 115 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 NUP35P2-201ENST00000416748 943 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.09□□□□□ -1.75
CLDN3O15551 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.09□□□□□ -1.75
CLDN3O15551 HIGD1AP12-201ENST00000427832 281 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.09□□□□□ -1.75
CLDN3O15551 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.09□□□□□ -1.75
CLDN3O15551 ACTR3P3-201ENST00000480448 893 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 TRBV12-2-201ENST00000489763 344 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 AC008565.1-201ENST00000509046 885 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.09□□□□□ -1.75
CLDN3O15551 SETP12-201ENST00000514068 805 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.09□□□□□ -1.75
CLDN3O15551 IGLVIV-53-201ENST00000520107 367 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.09□□□□□ -1.75
CLDN3O15551 AL442163.2-201ENST00000553912 710 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.09□□□□□ -1.75
CLDN3O15551 AC006960.3-201ENST00000561845 705 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.09□□□□□ -1.75
CLDN3O15551 AL390816.3-201ENST00000604527 1066 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 RNU1-30P-201ENST00000606575 163 ntBASIC4.09□□□□□ -1.75
CLDN3O15551 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms