Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RPS3AP46-201ENST00000448352 682 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 FABP3P2-201ENST00000453169 399 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 SUN3-208ENST00000453192 801 ntTSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 CCDC75P1-201ENST00000469247 791 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC017015.1-201ENST00000477387 286 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC006517.1-201ENST00000480485 328 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 RNU1-30P-201ENST00000606575 163 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC243312.2-201ENST00000623340 601 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC114546.3-201ENST00000623582 1734 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 AC022031.1-201ENST00000585985 2593 ntBASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC7.37□□□□□ -1.23
SHROOM4Q9ULL8 RNU6-354P-201ENST00000383862 107 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 RNU6-610P-201ENST00000384264 107 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 MIR525-201ENST00000384978 85 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC068135.1-201ENST00000446164 246 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 RPL23AP94-201ENST00000512518 302 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC090136.1-201ENST00000520009 240 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AL669942.2-201ENST00000620352 697 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 ASNSP1-201ENST00000518311 1939 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 RNU6-543P-201ENST00000362576 108 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 HLA-N-201ENST00000437516 135 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 GAS5-223ENST00000452197 483 ntTSL 3 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AL049873.1-201ENST00000480540 376 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AP003355.1-201ENST00000518956 587 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 DEFB109D-201ENST00000529497 240 ntBASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC7.36□□□□□ -1.23
SHROOM4Q9ULL8 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AP002001.2-201ENST00000529025 1469 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AL355596.1-201ENST00000565399 3996 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 Y_RNA.500-201ENST00000384466 111 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AL035405.1-201ENST00000400795 710 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 OR5AW1P-201ENST00000426334 1006 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AL096829.2-201ENST00000446582 742 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AL096803.2-201ENST00000450032 677 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AC022146.1-201ENST00000595307 847 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 LINC01109-201ENST00000603837 3081 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AC011816.2-201ENST00000607089 556 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 MIR8057-201ENST00000620957 69 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 AC106858.1-201ENST00000637497 429 ntBASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
SHROOM4Q9ULL8 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 AC092435.4-201ENST00000623012 4159 ntBASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 ARL4AP3-201ENST00000441452 574 ntBASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 AC021146.3-201ENST00000511911 260 ntBASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 HMGB1P1-201ENST00000522557 636 ntBASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
SHROOM4Q9ULL8 AC011611.5-201ENST00000552477 578 ntBASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms