Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS28Q9UK41 KPNA2P2-201ENST00000419546 1489 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC087190.4-201ENST00000574616 8334 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC026951.1-201ENST00000559530 2459 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS28Q9UK41 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 FAM3C2-201ENST00000312214 681 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 OR4A15-201ENST00000314706 1035 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 MIR448-201ENST00000362131 111 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 RNA5SP22-201ENST00000365393 109 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 MIR93-201ENST00000385024 80 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 VN1R8P-201ENST00000407739 893 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AL139095.3-201ENST00000419672 1203 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 RAC1P8-201ENST00000427086 527 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC114495.1-201ENST00000441274 436 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 HMGB3P6-201ENST00000444896 598 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC083829.1-201ENST00000503756 657 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 ATP1B1P1-201ENST00000509767 915 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC006499.6-201ENST00000511169 607 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC006518.1-201ENST00000541449 943 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 LSM6P2-201ENST00000552208 177 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 MTCYBP27-201ENST00000555160 670 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC023575.1-201ENST00000580510 358 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 KPNA2P3-201ENST00000584190 848 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 AL160290.3-201ENST00000604869 165 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC009237.15-201ENST00000610252 501 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC083809.1-201ENST00000615051 472 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AC007546.2-201ENST00000623996 360 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS28Q9UK41 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS28Q9UK41 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
VPS28Q9UK41 MTND5P3-201ENST00000438536 1800 ntBASIC4.49□□□□□ -1.69
VPS28Q9UK41 AL133243.3-201ENST00000617415 3004 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 RNU6-1066P-201ENST00000363573 105 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 MIR708-201ENST00000390708 88 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL355379.1-201ENST00000405542 640 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL136133.1-201ENST00000413694 376 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 Z75741.2-201ENST00000417272 1167 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 MTCO1P54-201ENST00000430139 712 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC241584.1-201ENST00000438469 1241 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 COX6CP18-201ENST00000448769 222 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 RN7SL385P-201ENST00000468873 276 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 RPL21P131-201ENST00000497298 483 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 RNA5SP154-201ENST00000516193 111 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 RNU4-60P-201ENST00000517239 135 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AP000790.1-201ENST00000528891 737 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VPS28Q9UK41 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC092470.1-201ENST00000546187 132 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 PSMB7P1-201ENST00000556349 514 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 OR4G1P-201ENST00000588632 938 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 GAS5-AS1-201ENST00000602767 694 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC011458.1-201ENST00000604034 617 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 Z98200.1-201ENST00000607298 470 ntBASIC4.48□□□□□ -1.69
VPS28Q9UK41 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
VPS28Q9UK41 AC114781.5-201ENST00000615297 108 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms