Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSU72Q9NP77 ZNF37CP-201ENST00000406795 241 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 MIR548P-201ENST00000408336 84 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL627308.1-201ENST00000435693 821 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 HMGB1P18-201ENST00000438801 619 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 GEMIN2P1-201ENST00000454246 752 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 SNORD19B-201ENST00000459623 84 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 TFP1-201ENST00000460564 572 ntTSL 4 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC010301.1-201ENST00000473936 355 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 RN7SL502P-201ENST00000481857 290 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 TFP1-203ENST00000490470 561 ntTSL 4 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL845552.1-201ENST00000556820 323 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 HMGB1P6-201ENST00000569046 646 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL078601.3-201ENST00000573303 535 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 MIR3157-201ENST00000578688 85 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC008507.3-201ENST00000585753 472 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC115085.1-201ENST00000588924 229 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC009597.2-201ENST00000604659 592 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 Z84480.1-201ENST00000605131 311 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 AC099654.6-201ENST00000636487 512 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSU72Q9NP77 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSU72Q9NP77 ZNF652P1-201ENST00000442420 1309 ntBASIC5.67□□□□□ -1.5
SSU72Q9NP77 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.67□□□□□ -1.5
SSU72Q9NP77 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC006020.1-201ENST00000420179 1854 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC027088.4-201ENST00000611559 1947 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SSU72Q9NP77 RNU6-921P-201ENST00000384361 107 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RNU6-1160P-201ENST00000384546 104 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RNU6-225P-201ENST00000384613 103 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 SNORA48.4-201ENST00000391089 134 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RNA5SP241-201ENST00000391326 114 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 EIF5P1-201ENST00000400019 1231 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AL591416.1-201ENST00000404015 867 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AL645937.1-202ENST00000421799 937 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 RBMY2QP-201ENST00000429799 1147 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 GAPDHP48-201ENST00000436626 961 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SSU72Q9NP77 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AL513533.1-201ENST00000453728 415 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC005229.2-201ENST00000456995 399 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RNU6-329P-201ENST00000459618 107 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 ABCC13-202ENST00000463099 3842 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AP000797.2-201ENST00000475768 606 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RPL7P39-201ENST00000481157 744 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RPS15AP36-201ENST00000492022 382 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 EIF4EP3-201ENST00000498782 656 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 ENPP7P11-201ENST00000505915 627 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC091912.1-201ENST00000511351 248 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 RNU6-1314P-201ENST00000517139 104 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 CYCSP28-201ENST00000534284 321 ntBASIC5.66□□□□□ -1.5
SSU72Q9NP77 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.66□□□□□ -1.5
SSU72Q9NP77 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms