Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RPL23AP93-201ENST00000440847 484 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 AL162591.2-201ENST00000449634 317 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC010468.1-201ENST00000461022 817 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC011276.1-201ENST00000469688 323 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 RPS3AP43-201ENST00000479743 781 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.36□□□□□ -1.55
NUP88Q99567 ARL2BPP5-201ENST00000523141 481 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 ISCA1P3-201ENST00000577104 373 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 KPNA2P3-201ENST00000584190 848 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC090616.2-202ENST00000584248 222 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC010620.1-201ENST00000601088 1102 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC245297.2-201ENST00000610119 565 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC012409.3-201ENST00000611343 981 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC009704.2-201ENST00000618739 483 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC015908.5-201ENST00000623289 343 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 AC091931.1-201ENST00000623488 728 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC114546.3-201ENST00000623582 1734 ntBASIC5.36□□□□□ -1.55
NUP88Q99567 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.36□□□□□ -1.55
NUP88Q99567 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NUP88Q99567 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
NUP88Q99567 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.35□□□□□ -1.55
NUP88Q99567 AC087359.1-201ENST00000508335 1740 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AL391684.1-202ENST00000641293 1636 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 RNU6-931P-201ENST00000363850 107 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 SNORA4.1-201ENST00000364263 144 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 RNU6-621P-201ENST00000364752 109 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
NUP88Q99567 SKINT1L-201ENST00000401057 817 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NUP88Q99567 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.35□□□□□ -1.55
NUP88Q99567 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.35□□□□□ -1.55
NUP88Q99567 LUZP4P1-201ENST00000415420 344 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC5.35□□□□□ -1.55
NUP88Q99567 TIMM9P2-201ENST00000419324 266 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.35□□□□□ -1.55
NUP88Q99567 UBE2D3P4-201ENST00000441973 436 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 MRPL48P1-201ENST00000445390 636 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 GEMIN8P3-201ENST00000445417 720 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 RSL24D1P3-201ENST00000449255 495 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 RPL23AP35-201ENST00000451906 501 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC108751.2-201ENST00000469993 231 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC5.35□□□□□ -1.55
NUP88Q99567 SYPL1P1-201ENST00000473622 768 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC010301.1-201ENST00000473936 355 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 NCOR1P1-202ENST00000486162 291 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC025164.1-201ENST00000496249 478 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.35□□□□□ -1.55
NUP88Q99567 RNU6-759P-201ENST00000516740 103 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.35□□□□□ -1.55
NUP88Q99567 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.35□□□□□ -1.55
NUP88Q99567 OR5AK1P-201ENST00000524837 922 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 SLC2A13P1-201ENST00000531560 322 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.35□□□□□ -1.55
NUP88Q99567 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.35□□□□□ -1.55
NUP88Q99567 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 AC090515.3-201ENST00000560431 315 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 MIR4504-201ENST00000577413 92 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.35□□□□□ -1.55
NUP88Q99567 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC5.35□□□□□ -1.55
NUP88Q99567 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 AC079248.2-201ENST00000623779 326 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC011944.2-201ENST00000624440 683 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NUP88Q99567 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
NUP88Q99567 NEAT1-202ENST00000501122 22743 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC025031.4-201ENST00000621248 3271 ntBASIC5.35□□□□□ -1.55
NUP88Q99567 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NUP88Q99567 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NUP88Q99567 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.35□□□□□ -1.55
NUP88Q99567 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.35□□□□□ -1.55
NUP88Q99567 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.35□□□□□ -1.55
NUP88Q99567 AL672167.1-203ENST00000641299 2975 ntBASIC5.34□□□□□ -1.55
NUP88Q99567 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
NUP88Q99567 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms