Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC097065.2-201ENST00000608159 533 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC005962.2-201ENST00000611427 652 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC005332.6-201ENST00000613178 446 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC009704.2-201ENST00000618739 483 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC140113.4-201ENST00000622087 222 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC015908.5-201ENST00000623289 343 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC011944.2-201ENST00000624440 683 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC025125.1-201ENST00000624743 1922 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC104118.1-201ENST00000607625 1589 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC087190.4-201ENST00000574616 8334 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 AC109315.1-201ENST00000584143 1347 ntBASIC4.18□□□□□ -1.74
BEST3Q8N1M1 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.18□□□□□ -1.74
BEST3Q8N1M1 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC006971.1-201ENST00000407916 4486 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 OR51H2P-202ENST00000641424 3046 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AP000776.1-201ENST00000530032 1663 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 RNA5SP28-201ENST00000363841 119 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL121978.1-201ENST00000402778 359 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 RNU2-42P-201ENST00000410697 113 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 MTND4P22-201ENST00000413116 1169 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 TMSB10P2-201ENST00000416049 131 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 BOLA3P4-201ENST00000418151 400 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL590609.2-201ENST00000421430 368 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC011998.1-201ENST00000433403 117 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC010881.1-201ENST00000433830 235 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC023347.2-201ENST00000433994 462 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 RPL12P46-201ENST00000436610 195 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 MTND3P1-201ENST00000441336 220 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 OR6K5P-201ENST00000447050 945 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC104978.1-201ENST00000449387 391 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 RN7SL817P-201ENST00000480777 288 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 RPS4XP18-201ENST00000495480 763 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 FTH1P24-201ENST00000503502 462 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AP000827.1-201ENST00000527814 258 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 OR4K7P-201ENST00000580232 945 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC020634.1-201ENST00000608701 549 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL450489.1-201ENST00000612071 468 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC090246.1-201ENST00000616499 426 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC022079.1-201ENST00000621546 602 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC073348.1-201ENST00000623002 331 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC026634.1-201ENST00000634369 198 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC055839.1-201ENST00000634467 498 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC068620.4-201ENST00000636730 1182 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 MKKS-204ENST00000639674 192 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 OR52H1-202ENST00000641796 1061 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC026951.1-201ENST00000559530 2459 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.17□□□□□ -1.74
BEST3Q8N1M1 AC005539.1-201ENST00000443768 1479 ntBASIC4.17□□□□□ -1.74
BEST3Q8N1M1 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 RNU5D-1-201ENST00000363299 116 ntBASIC4.16□□□□□ -1.74
BEST3Q8N1M1 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 RNU6-444P-201ENST00000383988 108 ntBASIC4.16□□□□□ -1.74
BEST3Q8N1M1 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
BEST3Q8N1M1 MTCO3P31-201ENST00000405526 789 ntBASIC4.16□□□□□ -1.74
BEST3Q8N1M1 RPL23AP47-201ENST00000408017 460 ntBASIC4.16□□□□□ -1.74
BEST3Q8N1M1 FCF1P2-201ENST00000415284 583 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms