Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.19□□□□□ -1.58
USP39Q53GS9 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 RNU6-660P-201ENST00000364566 109 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 OR1L6-202ENST00000373684 1044 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
USP39Q53GS9 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 MIR142-201ENST00000384835 87 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
USP39Q53GS9 SNORA68.2-201ENST00000391263 128 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
USP39Q53GS9 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.19□□□□□ -1.58
USP39Q53GS9 RN7SKP114-201ENST00000410327 279 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AC009237.5-201ENST00000414271 501 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 COX6CP17-201ENST00000421389 185 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 RPL19P16-201ENST00000433839 588 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AL161722.2-201ENST00000434731 981 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC234064.1-201ENST00000436312 247 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AL512286.1-201ENST00000439244 400 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 UBE2V1P3-201ENST00000439651 417 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AC112498.1-201ENST00000444401 332 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 Z99127.3-201ENST00000448158 395 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 MTND1P16-201ENST00000465177 898 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC016559.2-201ENST00000510759 359 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 BTF3P13-201ENST00000513224 490 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 RNU6-875P-201ENST00000516488 106 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 MIR4666A-201ENST00000580160 79 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC006504.3-201ENST00000586818 523 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AL365503.1-201ENST00000605247 905 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AP000860.1-201ENST00000605250 559 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC087045.1-201ENST00000605856 382 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 AP000346.3-201ENST00000622821 210 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.19□□□□□ -1.58
USP39Q53GS9 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
USP39Q53GS9 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 AC093591.2-201ENST00000565254 3843 ntBASIC5.19□□□□□ -1.58
USP39Q53GS9 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.19□□□□□ -1.58
USP39Q53GS9 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP39Q53GS9 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.18□□□□□ -1.58
USP39Q53GS9 MTND4P12-201ENST00000498999 1377 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 AC017104.4-201ENST00000636283 1592 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
USP39Q53GS9 RNU1-32P-201ENST00000363937 159 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 RNA5SP428-201ENST00000365129 132 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 RNU6-398P-201ENST00000384143 109 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 SNORA66-201ENST00000384792 133 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 C4BPAP2-201ENST00000428434 478 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 DNAJC19P7-201ENST00000428811 344 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AC091390.1-201ENST00000433904 331 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC002542.1-201ENST00000440683 193 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 MTATP6P30-201ENST00000443540 664 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC023512.1-201ENST00000444513 499 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms