Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC091905.4-201ENST00000623432 202 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.99□□□□□ -1.77
HOXD3P31249 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC093591.2-201ENST00000565254 3843 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 MAPK10-338ENST00000641647 3362 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXD3P31249 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 RNU5F-6P-201ENST00000362979 116 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RNU4-91P-201ENST00000364778 135 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 OR1L6-202ENST00000373684 1044 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 AC019155.1-201ENST00000382242 574 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RNU6-146P-201ENST00000384602 108 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AL121972.1-201ENST00000402023 252 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AL390316.1-201ENST00000406279 553 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 MIR1182-201ENST00000408363 97 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC073264.1-201ENST00000411508 416 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 GPS2P1-201ENST00000411761 986 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC109780.2-201ENST00000413467 845 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 TMBIM7P-201ENST00000418074 855 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 LINC00993-201ENST00000420453 540 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 FNDC3CP-201ENST00000420795 1155 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC010975.2-201ENST00000427781 588 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 Z74696.2-201ENST00000436514 498 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC092427.1-201ENST00000439177 601 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 NPM1P49-201ENST00000448027 714 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC090804.1-201ENST00000448870 490 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 TPT1P13-201ENST00000449760 499 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 APOOP2-201ENST00000461561 539 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 DAP3-209ENST00000465375 729 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC092757.1-201ENST00000467293 467 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RN7SL738P-201ENST00000470264 297 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RPS29P22-201ENST00000472363 168 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RN7SL814P-201ENST00000487715 300 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 RNU6-488P-201ENST00000515918 99 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RN7SKP260-201ENST00000516907 149 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 MTND4LP26-201ENST00000518144 282 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 NPM1P6-201ENST00000521088 871 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXD3P31249 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 AL389895.1-201ENST00000554127 252 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 AC009852.2-201ENST00000567898 485 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC141257.3-201ENST00000572906 215 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 MIR4528-201ENST00000577763 90 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AP001004.1-201ENST00000582468 324 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 RN7SL52P-201ENST00000584271 284 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC011447.4-201ENST00000587562 111 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.98□□□□□ -1.77
HOXD3P31249 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC3.98□□□□□ -1.77
HOXD3P31249 NDUFA8P1-201ENST00000605525 367 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC090948.2-201ENST00000607363 564 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 AC006566.1-201ENST00000608943 513 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 RN7SL722P-201ENST00000617780 284 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms