Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.61□□□□□ -1.51
COL6A1P12109 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.61□□□□□ -1.51
COL6A1P12109 AL732292.1-201ENST00000426692 226 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC5.61□□□□□ -1.51
COL6A1P12109 AL050321.1-201ENST00000432363 400 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 NRBF2P3-201ENST00000432731 865 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC099654.2-201ENST00000433031 1980 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.61□□□□□ -1.51
COL6A1P12109 AL671855.1-201ENST00000446875 1203 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.61□□□□□ -1.51
COL6A1P12109 TRBV8-2-201ENST00000475637 270 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC004924.1-201ENST00000480160 781 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.61□□□□□ -1.51
COL6A1P12109 DYNLL1P6-201ENST00000503440 264 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 AC100871.1-201ENST00000507871 1456 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC093281.2-201ENST00000510153 597 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC116347.2-201ENST00000514912 523 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 RN7SKP244-201ENST00000516513 307 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC5.61□□□□□ -1.51
COL6A1P12109 AC022790.1-201ENST00000522872 204 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 HNRNPCP4-201ENST00000571636 900 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 SLC25A36P1-201ENST00000590111 465 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 VN1R92P-201ENST00000598511 928 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AC090970.3-201ENST00000612566 866 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 AL589743.7-201ENST00000612637 233 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
COL6A1P12109 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 AL049555.1-201ENST00000562834 1933 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A1P12109 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 RNY4P24-201ENST00000362735 96 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 MIR129-1-201ENST00000384972 72 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A1P12109 CCDC58P2-201ENST00000417131 366 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A1P12109 SEPT7P5-201ENST00000434048 306 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 HMGB1P45-201ENST00000435986 653 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A1P12109 UBE2V1P7-201ENST00000446395 340 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 COX6CP12-201ENST00000446748 202 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 CEACAMP6-201ENST00000452007 574 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
COL6A1P12109 TMED11P-201ENST00000479478 690 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AC073522.1-201ENST00000483312 377 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 ACTG1P13-201ENST00000486987 1043 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 TCP11X3P-202ENST00000514289 1254 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 RNU6-1225P-201ENST00000516336 65 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AC092709.1-201ENST00000521355 1045 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.6□□□□□ -1.51
COL6A1P12109 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A1P12109 OR8Q1P-201ENST00000526467 655 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A1P12109 MED28P5-201ENST00000528254 438 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC5.6□□□□□ -1.51
COL6A1P12109 OR4C2P-201ENST00000530855 1064 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.6□□□□□ -1.51
COL6A1P12109 OR6C7P-201ENST00000547875 934 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.6□□□□□ -1.51
COL6A1P12109 AC090751.1-201ENST00000566966 267 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 TVP23CP2-201ENST00000571473 623 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 SNORA59B-202ENST00000578183 701 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 AC090517.2-201ENST00000614966 680 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A1P12109 OR5AK4P-201ENST00000635912 903 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL6A1P12109 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL6A1P12109 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
COL6A1P12109 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A1P12109 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.6□□□□□ -1.51
COL6A1P12109 AC083843.2-201ENST00000568248 6253 ntBASIC5.6□□□□□ -1.51
COL6A1P12109 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A1P12109 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A1P12109 AC004076.2-201ENST00000620532 3323 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL6A1P12109 RNU6-259P-201ENST00000383999 107 ntBASIC5.59□□□□□ -1.51
COL6A1P12109 RNU6-114P-201ENST00000384704 105 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms