Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.19□□□□□ -1.58
COL3A1P02461 AC084290.1-201ENST00000434995 374 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 RANP8-201ENST00000444720 713 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AL929288.2-201ENST00000446368 407 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 AL500522.2-201ENST00000448562 343 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 RN7SL323P-201ENST00000494712 295 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.19□□□□□ -1.58
COL3A1P02461 RAC1P2-201ENST00000511164 579 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AC008549.1-201ENST00000512900 643 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 MTCO1P49-201ENST00000523429 802 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.19□□□□□ -1.58
COL3A1P02461 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 AC233702.9-201ENST00000581528 203 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.19□□□□□ -1.58
COL3A1P02461 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.19□□□□□ -1.58
COL3A1P02461 AL390816.3-201ENST00000604527 1066 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 AC025016.1-201ENST00000616746 682 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL3A1P02461 AC099654.13-201ENST00000639774 207 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL3A1P02461 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.19□□□□□ -1.58
COL3A1P02461 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.19□□□□□ -1.58
COL3A1P02461 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL3A1P02461 AC011266.1-201ENST00000624119 3569 ntBASIC5.19□□□□□ -1.58
COL3A1P02461 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL3A1P02461 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 ZNF542P-204ENST00000482727 1305 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.18□□□□□ -1.58
COL3A1P02461 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.18□□□□□ -1.58
COL3A1P02461 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 RNU5B-4P-201ENST00000363508 111 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 MIR513A2-201ENST00000385249 127 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL3A1P02461 RNU4-27P-201ENST00000410889 139 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 UBE2V1P10-201ENST00000414685 269 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 MTND2P21-201ENST00000436242 1042 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.18□□□□□ -1.58
COL3A1P02461 ARF4P4-201ENST00000439608 520 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC5.18□□□□□ -1.58
COL3A1P02461 AC009961.3-201ENST00000449832 765 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 RPL21P131-201ENST00000497298 483 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.18□□□□□ -1.58
COL3A1P02461 DSTNP2-201ENST00000504533 515 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 RNU6-491P-201ENST00000516099 110 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.18□□□□□ -1.58
COL3A1P02461 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.18□□□□□ -1.58
COL3A1P02461 GNRHR2P1-201ENST00000555315 631 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC5.18□□□□□ -1.58
COL3A1P02461 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC5.18□□□□□ -1.58
COL3A1P02461 Z82195.1-201ENST00000604558 398 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL3A1P02461 THAP12P8-201ENST00000447914 2115 ntBASIC5.18□□□□□ -1.58
COL3A1P02461 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.18□□□□□ -1.58
COL3A1P02461 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL3A1P02461 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL3A1P02461 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL3A1P02461 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL3A1P02461 MTND5P29-201ENST00000458676 1807 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 SNORA71.3-201ENST00000362582 128 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 RHOT1P2-201ENST00000366423 333 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 RNU6-761P-201ENST00000384148 107 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL3A1P02461 RN7SKP156-201ENST00000410308 342 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 RNU4-72P-201ENST00000410754 173 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AC004022.2-201ENST00000413824 193 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 RNF19BPX-201ENST00000426224 625 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.17□□□□□ -1.58
COL3A1P02461 DPPA2P1-201ENST00000428060 556 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC5.17□□□□□ -1.58
COL3A1P02461 NEK4P1-201ENST00000433383 879 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AL008629.1-201ENST00000438615 184 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.17□□□□□ -1.58
COL3A1P02461 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC5.17□□□□□ -1.58
COL3A1P02461 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.17□□□□□ -1.58
COL3A1P02461 PTGES3P5-201ENST00000455109 434 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AC084198.1-201ENST00000477747 402 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 RN7SL271P-201ENST00000487601 295 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AC034244.1-201ENST00000507687 207 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AC111000.2-201ENST00000507775 550 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 MTND5P13-201ENST00000513046 1079 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 MTCO2P32-201ENST00000514865 403 ntBASIC5.17□□□□□ -1.58
COL3A1P02461 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL3A1P02461 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms