Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC006504.6-201ENST00000590142 199 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC006006.1-201ENST00000603082 144 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC087283.1-201ENST00000604029 1074 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 MLECP1-201ENST00000615893 709 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 CU639417.4-201ENST00000623928 207 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC073869.10-201ENST00000642016 354 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 ZNF33BP1-201ENST00000452497 1834 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 AC007823.1-201ENST00000569932 1566 ntBASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
CCDC39Q9UFE4 VN2R3P-201ENST00000422626 1412 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC003973.3-201ENST00000624863 2822 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RNU5F-6P-201ENST00000362979 116 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 SNORA51.2-201ENST00000364595 132 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RNU6-878P-201ENST00000384578 110 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL034403.1-201ENST00000399414 885 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RNU4-55P-201ENST00000410731 137 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RPL26P37-201ENST00000411983 438 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AMD1P2-201ENST00000412936 992 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 OR6E1P-201ENST00000414424 923 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL596448.1-201ENST00000415024 392 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 FCF1P2-201ENST00000415284 583 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 NCOR1P3-201ENST00000420479 303 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL035410.1-201ENST00000427409 427 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC234064.1-201ENST00000436312 247 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL138899.2-201ENST00000439139 499 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC064862.4-201ENST00000442180 334 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL353898.1-201ENST00000444055 238 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RPL36AP39-201ENST00000445859 318 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 OR52E7P-201ENST00000452394 933 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RPL39P36-201ENST00000490784 156 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC017037.1-201ENST00000508460 471 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RN7SKP99-201ENST00000517028 307 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC112191.2-201ENST00000522428 333 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 OSBPL9P2-201ENST00000526582 1228 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 YWHABP2-201ENST00000540201 713 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL359212.1-201ENST00000556608 614 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 MIR4505-201ENST00000582238 73 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 RN7SL435P-201ENST00000584418 282 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 NRBF2P5-201ENST00000603087 788 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AP005137.2-201ENST00000609238 400 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC103710.1-201ENST00000610003 901 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC027807.2-201ENST00000616099 408 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 AC079228.1-201ENST00000624774 1049 ntBASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC39Q9UFE4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 Y_RNA.86-201ENST00000363020 111 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 SNORD81.2-201ENST00000365153 76 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 RNU6-483P-201ENST00000384088 108 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 RNU6-463P-201ENST00000384340 107 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC104297.1-201ENST00000393779 870 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 RSU1P3-201ENST00000412878 835 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 PDCL2P1-201ENST00000419302 352 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AL389915.1-201ENST00000422463 466 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 NUP35P1-201ENST00000422734 947 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AKR1B10P1-201ENST00000425765 942 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 ACTR3P2-201ENST00000439585 1257 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 YWHAQP9-201ENST00000445891 512 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms