Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RNA5SP307-201ENST00000362863 116 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 RNU6-582P-201ENST00000362989 107 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 RNA5SP513-201ENST00000364648 118 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 RNU4-28P-201ENST00000364739 141 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RNU6-413P-201ENST00000384115 107 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 SNORD116-23-201ENST00000384645 92 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AL583835.1-201ENST00000399570 407 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC097374.1-203ENST00000400783 485 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 MTND4P13-201ENST00000402078 1023 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 RPL22P18-201ENST00000417197 377 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC009237.2-201ENST00000421358 284 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AL031736.2-201ENST00000426573 787 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC068287.1-201ENST00000430283 295 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RPL23AP76-201ENST00000441860 458 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 HMGB1P48-201ENST00000446155 598 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC009220.1-201ENST00000451614 275 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 VN1R32P-201ENST00000452234 905 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 MTND2P28-201ENST00000457540 1044 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RPL7P22-201ENST00000466005 733 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 NDUFA5P9-201ENST00000472609 340 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RN7SL481P-201ENST00000477764 299 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC111000.3-201ENST00000508057 576 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC008837.2-201ENST00000513076 418 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RN7SKP92-201ENST00000517266 244 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 SMARCE1P4-201ENST00000523647 241 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 MTND3P12-201ENST00000559068 328 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AADACP1-206ENST00000561502 1193 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 MIR4716-201ENST00000579628 84 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC061975.8-201ENST00000587058 721 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 NF1P5-201ENST00000588287 448 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC234771.5-201ENST00000600161 514 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC008638.3-201ENST00000603341 463 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AL139395.1-201ENST00000603662 160 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AP003973.1-201ENST00000604639 691 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 MIR6798-201ENST00000612887 67 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC009318.3-201ENST00000616916 503 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 RMST_9.1-201ENST00000619945 193 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 AL133412.1-201ENST00000380194 2992 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.79□□□□□ -1.8
NKX3-1Q99801 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-1Q99801 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
NKX3-1Q99801 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL139811.1-201ENST00000424779 2299 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-1Q99801 NACA3P-201ENST00000359690 648 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 RNA5SP502-201ENST00000362694 119 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 RNU6-839P-201ENST00000363347 108 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 RNVU1-6-201ENST00000364688 164 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 RNU6-1293P-201ENST00000384077 107 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 MIR141-201ENST00000384975 95 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 RNA5SP332-201ENST00000391063 115 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 SNORD66.1-201ENST00000391230 76 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 HNRNPDP2-201ENST00000406475 478 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 ELOCP9-201ENST00000418624 239 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.78□□□□□ -1.8
NKX3-1Q99801 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.78□□□□□ -1.8
NKX3-1Q99801 AC010881.1-201ENST00000433830 235 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms