Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RN7SL177P-201ENST00000476596 299 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2□□□□□ -2.09
LINC00643Q86TS7 VN1R105P-201ENST00000486595 910 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC011005.3-201ENST00000491624 395 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC005912.1-201ENST00000495392 255 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 SEM1P1-201ENST00000506694 209 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC2□□□□□ -2.09
LINC00643Q86TS7 TBCAP3-201ENST00000512475 312 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2□□□□□ -2.09
LINC00643Q86TS7 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC025881.1-201ENST00000518851 512 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC2□□□□□ -2.09
LINC00643Q86TS7 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2□□□□□ -2.09
LINC00643Q86TS7 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC084783.1-201ENST00000565846 910 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC015917.1-201ENST00000579654 510 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AF186192.2-204ENST00000581667 524 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 FAM106CP-201ENST00000582212 507 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC006116.3-201ENST00000592968 361 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AL512329.2-201ENST00000607350 548 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC099676.1-201ENST00000608886 657 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC2□□□□□ -2.09
LINC00643Q86TS7 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC119674.1-207ENST00000641355 633 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2□□□□□ -2.09
LINC00643Q86TS7 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2□□□□□ -2.09
LINC00643Q86TS7 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 NACA3P-201ENST00000359690 648 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 SNORA55-201ENST00000364587 135 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RNU1-106P-201ENST00000384382 164 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RSL24D1P1-201ENST00000404972 493 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC108032.1-201ENST00000416706 207 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC048351.1-201ENST00000420064 602 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RPS6P14-201ENST00000425165 719 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 NPM1P48-201ENST00000436002 853 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC006994.1-201ENST00000438212 839 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RRM2P4-201ENST00000441721 562 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RPL7P52-201ENST00000449200 742 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AL109741.2-201ENST00000455561 343 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RPS27AP2-201ENST00000457576 465 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RN7SL30P-201ENST00000488416 306 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC108693.1-201ENST00000496068 432 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 HMGB1P3-201ENST00000502802 616 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AP000857.1-201ENST00000532151 543 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC010542.3-202ENST00000561728 701 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 RPL12P50-201ENST00000603116 116 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC083964.1-201ENST00000607549 630 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC112503.1-201ENST00000608436 391 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 MIR6768-201ENST00000610734 72 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 uc_338.1-201ENST00000612113 180 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AL390240.1-201ENST00000612950 384 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC008115.4-201ENST00000619780 775 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
LINC00643Q86TS7 AC233263.6-201ENST00000631132 1963 ntBASIC1.99□□□□□ -2.09
LINC00643Q86TS7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC132825.1-201ENST00000463573 2247 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 SNORA25.6-201ENST00000364121 118 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 RNU11-4P-201ENST00000391149 133 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 SNX10-203ENST00000409367 746 ntTSL 5 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AL031736.2-201ENST00000426573 787 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 CYCSP4-201ENST00000429682 331 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 BTF3P10-201ENST00000433415 495 ntBASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.98□□□□□ -2.09
LINC00643Q86TS7 AC127537.2-201ENST00000439258 465 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms