Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.41□□□□□ -1.54
CUX1P39880 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CUX1P39880 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC5.41□□□□□ -1.54
CUX1P39880 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC5.41□□□□□ -1.54
CUX1P39880 SETP15-201ENST00000412724 337 ntBASIC5.41□□□□□ -1.54
CUX1P39880 AL160175.1-201ENST00000428124 247 ntBASIC5.41□□□□□ -1.54
CUX1P39880 AC005002.1-201ENST00000447458 540 ntBASIC5.41□□□□□ -1.54
CUX1P39880 AC140076.1-201ENST00000449897 361 ntBASIC5.41□□□□□ -1.54
CUX1P39880 AC004924.1-201ENST00000480160 781 ntBASIC5.41□□□□□ -1.54
CUX1P39880 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.41□□□□□ -1.54
CUX1P39880 AL121576.1-201ENST00000556055 276 ntBASIC5.41□□□□□ -1.54
CUX1P39880 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC5.41□□□□□ -1.54
CUX1P39880 AL390838.2-201ENST00000602394 274 ntBASIC5.41□□□□□ -1.54
CUX1P39880 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.41□□□□□ -1.54
CUX1P39880 AL359757.2-201ENST00000624309 274 ntBASIC5.41□□□□□ -1.54
CUX1P39880 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.41□□□□□ -1.54
CUX1P39880 AC018555.1-201ENST00000567548 1980 ntBASIC5.41□□□□□ -1.54
CUX1P39880 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.41□□□□□ -1.54
CUX1P39880 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CUX1P39880 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.41□□□□□ -1.54
CUX1P39880 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CUX1P39880 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CUX1P39880 AC011503.2-201ENST00000594230 1500 ntBASIC5.4□□□□□ -1.54
CUX1P39880 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CUX1P39880 MIR448-201ENST00000362131 111 ntBASIC5.4□□□□□ -1.54
CUX1P39880 AC012065.2-201ENST00000421295 375 ntBASIC5.4□□□□□ -1.54
CUX1P39880 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
CUX1P39880 SKP1P1-201ENST00000438081 489 ntBASIC5.4□□□□□ -1.54
CUX1P39880 RN7SL93P-201ENST00000463035 293 ntBASIC5.4□□□□□ -1.54
CUX1P39880 S100A11P1-201ENST00000477525 312 ntBASIC5.4□□□□□ -1.54
CUX1P39880 KC877373.1-201ENST00000479066 408 ntBASIC5.4□□□□□ -1.54
CUX1P39880 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC5.4□□□□□ -1.54
CUX1P39880 OR1AB1P-201ENST00000585564 761 ntBASIC5.4□□□□□ -1.54
CUX1P39880 BNIP3P38-201ENST00000601117 544 ntBASIC5.4□□□□□ -1.54
CUX1P39880 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC5.4□□□□□ -1.54
CUX1P39880 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.4□□□□□ -1.55
CUX1P39880 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC5.4□□□□□ -1.55
CUX1P39880 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.39□□□□□ -1.55
CUX1P39880 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CUX1P39880 AC062016.1-201ENST00000355719 319 ntBASIC5.39□□□□□ -1.55
CUX1P39880 AL121834.1-202ENST00000404494 277 ntBASIC5.39□□□□□ -1.55
CUX1P39880 AL135938.1-201ENST00000443141 297 ntBASIC5.39□□□□□ -1.55
CUX1P39880 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CUX1P39880 RPL7L1P13-201ENST00000511702 739 ntBASIC5.39□□□□□ -1.55
CUX1P39880 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.39□□□□□ -1.55
CUX1P39880 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC5.39□□□□□ -1.55
CUX1P39880 AL137790.1-201ENST00000634283 177 ntBASIC5.39□□□□□ -1.55
CUX1P39880 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
CUX1P39880 AL672296.1-201ENST00000427780 2158 ntBASIC5.39□□□□□ -1.55
CUX1P39880 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CUX1P39880 NCAPGP1-201ENST00000505112 1814 ntBASIC5.39□□□□□ -1.55
CUX1P39880 RNU6-7-201ENST00000364784 107 ntBASIC5.38□□□□□ -1.55
CUX1P39880 RNU6-8-201ENST00000365467 107 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC5.38□□□□□ -1.55
CUX1P39880 FTLP19-201ENST00000433300 394 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AC092447.2-201ENST00000435487 669 ntBASIC5.38□□□□□ -1.55
CUX1P39880 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 SCARNA20.6-201ENST00000517251 106 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AL360157.1-201ENST00000565962 87 ntBASIC5.38□□□□□ -1.55
CUX1P39880 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC5.38□□□□□ -1.55
CUX1P39880 KPNA2P2-201ENST00000419546 1489 ntBASIC5.38□□□□□ -1.55
CUX1P39880 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 BCLAF1P1-201ENST00000505813 2752 ntBASIC5.38□□□□□ -1.55
CUX1P39880 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.38□□□□□ -1.55
CUX1P39880 CR381670.1-201ENST00000624291 1693 ntBASIC5.38□□□□□ -1.55
CUX1P39880 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CUX1P39880 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 MIR449A-201ENST00000362113 91 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AC126124.2-201ENST00000413542 321 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AC002075.2-201ENST00000425207 252 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AC099560.2-201ENST00000457554 255 ntBASIC5.38□□□□□ -1.55
CUX1P39880 VN1R104P-201ENST00000505115 1009 ntBASIC5.38□□□□□ -1.55
CUX1P39880 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.38□□□□□ -1.55
CUX1P39880 HMGB1P19-201ENST00000517578 577 ntBASIC5.38□□□□□ -1.55
CUX1P39880 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
CUX1P39880 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.38□□□□□ -1.55
CUX1P39880 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC5.38□□□□□ -1.55
CUX1P39880 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC5.38□□□□□ -1.55
CUX1P39880 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CUX1P39880 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC5.38□□□□□ -1.55
CUX1P39880 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC5.38□□□□□ -1.55
CUX1P39880 AL583832.1-201ENST00000603227 784 ntBASIC5.38□□□□□ -1.55
CUX1P39880 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC5.38□□□□□ -1.55
CUX1P39880 AC007998.5-201ENST00000622938 237 ntBASIC5.38□□□□□ -1.55
CUX1P39880 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
CUX1P39880 SAGE4P-201ENST00000442271 3381 ntBASIC5.37□□□□□ -1.55
CUX1P39880 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC5.37□□□□□ -1.55
CUX1P39880 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
CUX1P39880 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CUX1P39880 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
CUX1P39880 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC5.37□□□□□ -1.55
CUX1P39880 GTF3AP2-201ENST00000557014 266 ntBASIC5.37□□□□□ -1.55
CUX1P39880 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.37□□□□□ -1.55
CUX1P39880 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.37□□□□□ -1.55
CUX1P39880 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms