Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX2P35548 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX2P35548 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 STX3-208ENST00000641815 3236 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 SLC9B1P1-201ENST00000331172 1337 ntBASIC5□□□□□ -1.61
MSX2P35548 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5□□□□□ -1.61
MSX2P35548 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5□□□□□ -1.61
MSX2P35548 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5□□□□□ -1.61
MSX2P35548 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
MSX2P35548 RNU6-216P-201ENST00000363282 104 ntBASIC5□□□□□ -1.61
MSX2P35548 RNU6-1090P-201ENST00000364065 94 ntBASIC5□□□□□ -1.61
MSX2P35548 Y_RNA.296-201ENST00000364930 108 ntBASIC5□□□□□ -1.61
MSX2P35548 RNU6-1009P-201ENST00000390996 107 ntBASIC5□□□□□ -1.61
MSX2P35548 AL590290.1-201ENST00000405336 380 ntBASIC5□□□□□ -1.61
MSX2P35548 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5□□□□□ -1.61
MSX2P35548 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5□□□□□ -1.61
MSX2P35548 AC073335.1-201ENST00000427776 363 ntBASIC5□□□□□ -1.61
MSX2P35548 ELOCP14-201ENST00000428070 331 ntBASIC5□□□□□ -1.61
MSX2P35548 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5□□□□□ -1.61
MSX2P35548 TIMM9P3-201ENST00000428659 274 ntBASIC5□□□□□ -1.61
MSX2P35548 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 RPL7P4-203ENST00000430239 730 ntBASIC5□□□□□ -1.61
MSX2P35548 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 MTCYBP45-201ENST00000435243 565 ntBASIC5□□□□□ -1.61
MSX2P35548 ELOCP7-201ENST00000439968 331 ntBASIC5□□□□□ -1.61
MSX2P35548 AC073909.1-201ENST00000447112 999 ntBASIC5□□□□□ -1.61
MSX2P35548 USP9YP12-201ENST00000450481 570 ntBASIC5□□□□□ -1.61
MSX2P35548 SLC31A1P1-201ENST00000451221 567 ntBASIC5□□□□□ -1.61
MSX2P35548 RPL26P28-201ENST00000451325 435 ntBASIC5□□□□□ -1.61
MSX2P35548 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5□□□□□ -1.61
MSX2P35548 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5□□□□□ -1.61
MSX2P35548 RPL5P22-201ENST00000480199 884 ntBASIC5□□□□□ -1.61
MSX2P35548 RPS24P16-201ENST00000497294 392 ntBASIC5□□□□□ -1.61
MSX2P35548 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5□□□□□ -1.61
MSX2P35548 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 AF131216.2-201ENST00000512316 564 ntBASIC5□□□□□ -1.61
MSX2P35548 MTCO1P35-201ENST00000515270 228 ntBASIC5□□□□□ -1.61
MSX2P35548 AC022360.1-201ENST00000521058 340 ntBASIC5□□□□□ -1.61
MSX2P35548 DEFB131D-201ENST00000526803 184 ntBASIC5□□□□□ -1.61
MSX2P35548 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5□□□□□ -1.61
MSX2P35548 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5□□□□□ -1.61
MSX2P35548 AL138976.2-201ENST00000563989 694 ntBASIC5□□□□□ -1.61
MSX2P35548 MRPS21P7-201ENST00000566937 238 ntBASIC5□□□□□ -1.61
MSX2P35548 AP005119.2-201ENST00000579735 1105 ntBASIC5□□□□□ -1.61
MSX2P35548 AC090312.2-201ENST00000582687 378 ntBASIC5□□□□□ -1.61
MSX2P35548 UBE2V2P2-201ENST00000587677 504 ntBASIC5□□□□□ -1.61
MSX2P35548 AC044792.1-201ENST00000593294 196 ntBASIC5□□□□□ -1.61
MSX2P35548 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5□□□□□ -1.61
MSX2P35548 AL162431.4-201ENST00000604674 411 ntBASIC5□□□□□ -1.61
MSX2P35548 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 AC008250.2-201ENST00000615261 205 ntBASIC5□□□□□ -1.61
MSX2P35548 AC104010.1-201ENST00000616889 150 ntBASIC5□□□□□ -1.61
MSX2P35548 AC108479.2-201ENST00000617314 601 ntBASIC5□□□□□ -1.61
MSX2P35548 AC023509.5-201ENST00000617434 807 ntBASIC5□□□□□ -1.61
MSX2P35548 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 AC093591.3-201ENST00000634516 308 ntBASIC5□□□□□ -1.61
MSX2P35548 UOX-205ENST00000640983 544 ntTSL 4 BASIC5□□□□□ -1.61
MSX2P35548 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
MSX2P35548 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 AC023421.1-201ENST00000590535 1785 ntBASIC5□□□□□ -1.61
MSX2P35548 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5□□□□□ -1.61
MSX2P35548 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
MSX2P35548 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5□□□□□ -1.61
MSX2P35548 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5□□□□□ -1.61
MSX2P35548 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 RNA5SP394-201ENST00000364216 119 ntBASIC4.99□□□□□ -1.61
MSX2P35548 RNU6-534P-201ENST00000364877 106 ntBASIC4.99□□□□□ -1.61
MSX2P35548 UBBP2-201ENST00000376781 231 ntBASIC4.99□□□□□ -1.61
MSX2P35548 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
MSX2P35548 OR7E101P-201ENST00000400428 513 ntBASIC4.99□□□□□ -1.61
MSX2P35548 HMGB1P20-201ENST00000402555 677 ntBASIC4.99□□□□□ -1.61
MSX2P35548 GSTA9P-201ENST00000406231 611 ntBASIC4.99□□□□□ -1.61
MSX2P35548 OR4K12P-201ENST00000406538 961 ntBASIC4.99□□□□□ -1.61
MSX2P35548 RN7SKP285-201ENST00000410137 318 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL136133.1-201ENST00000413694 376 ntBASIC4.99□□□□□ -1.61
MSX2P35548 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.99□□□□□ -1.61
MSX2P35548 C1DP2-201ENST00000418167 426 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms