Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 IGHV3-32-201ENST00000519182 355 ntBASIC4□□□□□ -1.77
HOXD3P31249 DUXAP2-201ENST00000519198 589 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4□□□□□ -1.77
HOXD3P31249 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4□□□□□ -1.77
HOXD3P31249 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4□□□□□ -1.77
HOXD3P31249 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4□□□□□ -1.77
HOXD3P31249 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4□□□□□ -1.77
HOXD3P31249 AC136618.2-201ENST00000575091 400 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 MIR4330-201ENST00000579077 105 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4□□□□□ -1.77
HOXD3P31249 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4□□□□□ -1.77
HOXD3P31249 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 AC115286.1-201ENST00000604298 434 ntBASIC4□□□□□ -1.77
HOXD3P31249 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 AC093799.2-201ENST00000610062 578 ntBASIC4□□□□□ -1.77
HOXD3P31249 AC138932.5-201ENST00000617759 563 ntBASIC4□□□□□ -1.77
HOXD3P31249 AL160394.1-201ENST00000624765 724 ntBASIC4□□□□□ -1.77
HOXD3P31249 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXD3P31249 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
HOXD3P31249 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXD3P31249 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC092447.7-201ENST00000422212 1621 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC092162.3-201ENST00000624511 1624 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 TEX21P-201ENST00000447107 1476 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 GDI2P1-201ENST00000429312 1336 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 USP9YP4-201ENST00000424401 1745 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 SNURFL-201ENST00000309296 343 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC011155.1-201ENST00000316512 456 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 SNORA5.1-201ENST00000384275 131 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 SNORA48.4-201ENST00000391089 134 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 RNA5SP241-201ENST00000391326 114 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 GJA6P-201ENST00000415117 1042 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 EI24P4-201ENST00000423683 1078 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 AL512649.1-201ENST00000428997 581 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 VDAC1P6-201ENST00000430062 855 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 AL357520.1-201ENST00000441557 453 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 NOP56P2-201ENST00000447491 769 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC009220.1-201ENST00000451614 275 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 SSXP1-201ENST00000453640 473 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 SUMO2P2-201ENST00000456482 255 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC006511.1-201ENST00000470614 315 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 RNU6-150P-201ENST00000516237 95 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 IGHVII-44-2-201ENST00000517728 250 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC134698.4-201ENST00000523451 826 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXD3P31249 OR5M2P-201ENST00000529003 936 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC016957.1-201ENST00000534895 309 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 GSTP1P1-201ENST00000548078 319 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.99□□□□□ -1.77
HOXD3P31249 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC079075.1-201ENST00000559543 878 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HOXD3P31249 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 RN7SL290P-201ENST00000578661 300 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC3.99□□□□□ -1.77
HOXD3P31249 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC3.99□□□□□ -1.77
HOXD3P31249 AC011626.1-201ENST00000604710 562 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 RNU6-88P-201ENST00000606801 100 ntBASIC3.99□□□□□ -1.77
HOXD3P31249 AC098614.4-201ENST00000607601 462 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms