Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.63□□□□□ -1.51
COL6A1P12109 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A1P12109 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A1P12109 MIR7853-201ENST00000584820 132 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A1P12109 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A1P12109 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC5.63□□□□□ -1.51
COL6A1P12109 AC020910.3-201ENST00000603701 874 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 MLECP1-201ENST00000615893 709 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AC138932.5-201ENST00000617759 563 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A1P12109 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL6A1P12109 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A1P12109 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A1P12109 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A1P12109 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
COL6A1P12109 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
COL6A1P12109 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.62□□□□□ -1.51
COL6A1P12109 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 OR10J6P-201ENST00000289731 930 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 FGF7P2-201ENST00000332473 296 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 RNU6-1339P-201ENST00000363574 91 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
COL6A1P12109 SNORD65.1-201ENST00000390889 71 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A1P12109 RPL7P44-201ENST00000424827 742 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 BX323845.1-201ENST00000432417 179 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC005154.2-201ENST00000438110 379 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC122718.1-201ENST00000439448 744 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A1P12109 EEF1E1P1-201ENST00000446998 430 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.62□□□□□ -1.51
COL6A1P12109 AURKAPS2-201ENST00000454983 333 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 FAM133DP-201ENST00000464802 691 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC5.62□□□□□ -1.51
COL6A1P12109 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC083829.1-201ENST00000503756 657 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC010350.1-201ENST00000504908 231 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC109471.1-201ENST00000511631 612 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.62□□□□□ -1.51
COL6A1P12109 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC074029.1-201ENST00000552531 1044 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC084757.1-201ENST00000559987 490 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC019322.1-201ENST00000571869 389 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 AL390838.2-201ENST00000602394 274 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AL356218.2-201ENST00000605264 187 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC109315.1-201ENST00000584143 1347 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
COL6A1P12109 AC010928.1-201ENST00000592477 1447 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 Z99496.1-201ENST00000469424 1477 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 AL360270.2-201ENST00000562952 5985 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
COL6A1P12109 AL121839.2-201ENST00000565058 6943 ntBASIC5.62□□□□□ -1.51
COL6A1P12109 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL6A1P12109 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
COL6A1P12109 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
COL6A1P12109 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 RNU6-797P-201ENST00000363101 109 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
COL6A1P12109 MIR1303-201ENST00000408625 86 ntBASIC5.61□□□□□ -1.51
COL6A1P12109 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL6A1P12109 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms