Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 AL035458.1-201ENST00000433096 585 ntBASIC1.47□□□□□ -2.17
USH2AO75445 AC069540.1-201ENST00000446320 988 ntBASIC1.47□□□□□ -2.17
USH2AO75445 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC1.47□□□□□ -2.17
USH2AO75445 KLHL2P1-201ENST00000508691 521 ntBASIC1.47□□□□□ -2.17
USH2AO75445 AC018797.3-201ENST00000513388 1241 ntBASIC1.47□□□□□ -2.17
USH2AO75445 SEC11B-201ENST00000518383 499 ntBASIC1.47□□□□□ -2.17
USH2AO75445 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC1.47□□□□□ -2.17
USH2AO75445 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 ADAM3A-203ENST00000461344 2157 ntBASIC1.47□□□□□ -2.17
USH2AO75445 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC1.47□□□□□ -2.17
USH2AO75445 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 RNA5-8SP4-201ENST00000365096 150 ntBASIC1.47□□□□□ -2.17
USH2AO75445 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 IL6-203ENST00000401651 539 ntTSL 2 BASIC1.47□□□□□ -2.17
USH2AO75445 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.47□□□□□ -2.17
USH2AO75445 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 AC008565.1-201ENST00000509046 885 ntBASIC1.47□□□□□ -2.17
USH2AO75445 RNU6-579P-201ENST00000516879 102 ntBASIC1.47□□□□□ -2.17
USH2AO75445 AC079600.2-201ENST00000550076 130 ntBASIC1.47□□□□□ -2.17
USH2AO75445 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC1.47□□□□□ -2.17
USH2AO75445 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC1.47□□□□□ -2.17
USH2AO75445 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USH2AO75445 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.17
USH2AO75445 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 SNORA5.1-201ENST00000384275 131 ntBASIC1.46□□□□□ -2.18
USH2AO75445 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.46□□□□□ -2.18
USH2AO75445 RNU6-1053P-201ENST00000515930 101 ntBASIC1.46□□□□□ -2.18
USH2AO75445 AC234778.2-201ENST00000566241 354 ntBASIC1.46□□□□□ -2.18
USH2AO75445 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC1.46□□□□□ -2.18
USH2AO75445 AC104662.1-201ENST00000604448 511 ntBASIC1.46□□□□□ -2.18
USH2AO75445 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC1.46□□□□□ -2.18
USH2AO75445 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
USH2AO75445 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC1.46□□□□□ -2.18
USH2AO75445 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 Y_RNA.122-201ENST00000363331 96 ntBASIC1.46□□□□□ -2.18
USH2AO75445 RN7SKP111-201ENST00000410349 271 ntBASIC1.46□□□□□ -2.18
USH2AO75445 NPM1P25-201ENST00000429734 854 ntBASIC1.46□□□□□ -2.18
USH2AO75445 MOB1AP1-201ENST00000430903 535 ntBASIC1.46□□□□□ -2.18
USH2AO75445 PRELID3BP10-201ENST00000431957 584 ntBASIC1.46□□□□□ -2.18
USH2AO75445 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC1.46□□□□□ -2.18
USH2AO75445 AC110794.1-201ENST00000505816 425 ntBASIC1.46□□□□□ -2.18
USH2AO75445 PPBPP1-201ENST00000510807 373 ntBASIC1.46□□□□□ -2.18
USH2AO75445 KLKP1-201ENST00000595979 403 ntBASIC1.46□□□□□ -2.18
USH2AO75445 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
USH2AO75445 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
USH2AO75445 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USH2AO75445 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
USH2AO75445 OR1S2-201ENST00000302592 978 ntBASIC1.46□□□□□ -2.18
USH2AO75445 MIR181A2-201ENST00000384863 110 ntBASIC1.46□□□□□ -2.18
USH2AO75445 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC1.46□□□□□ -2.18
USH2AO75445 AC008280.2-201ENST00000455473 307 ntBASIC1.46□□□□□ -2.18
USH2AO75445 GAPDHP39-201ENST00000481866 979 ntBASIC1.46□□□□□ -2.18
USH2AO75445 HMGB3P16-201ENST00000508037 287 ntBASIC1.46□□□□□ -2.18
USH2AO75445 RN7SKP46-201ENST00000515942 234 ntBASIC1.46□□□□□ -2.18
USH2AO75445 AP002404.1-201ENST00000532005 451 ntBASIC1.46□□□□□ -2.18
USH2AO75445 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC1.46□□□□□ -2.18
USH2AO75445 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.46□□□□□ -2.18
USH2AO75445 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC1.46□□□□□ -2.18
USH2AO75445 ELOCP29-201ENST00000588193 334 ntBASIC1.46□□□□□ -2.18
USH2AO75445 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms