Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.16□□□□□ -1.74
CLDN3O15551 RPS27P5-201ENST00000444247 244 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.16□□□□□ -1.74
CLDN3O15551 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.16□□□□□ -1.74
CLDN3O15551 RPL21P71-201ENST00000465598 459 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CLDN3O15551 AP000926.1-201ENST00000479573 241 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.16□□□□□ -1.74
CLDN3O15551 AC090071.1-201ENST00000507713 644 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 AC008802.1-201ENST00000519121 791 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.16□□□□□ -1.74
CLDN3O15551 MTCO1P49-201ENST00000523429 802 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.16□□□□□ -1.74
CLDN3O15551 AC090877.1-201ENST00000561418 344 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.16□□□□□ -1.74
CLDN3O15551 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.16□□□□□ -1.74
CLDN3O15551 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.16□□□□□ -1.74
CLDN3O15551 AC068790.5-201ENST00000602741 355 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 NTAN1P1-201ENST00000603150 646 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 AC083899.3-201ENST00000603413 594 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 AC113194.1-201ENST00000606037 500 ntBASIC4.16□□□□□ -1.74
CLDN3O15551 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN3O15551 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.16□□□□□ -1.74
CLDN3O15551 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN3O15551 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN3O15551 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN3O15551 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CLDN3O15551 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.15□□□□□ -1.74
CLDN3O15551 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.15□□□□□ -1.74
CLDN3O15551 XIAPP3-201ENST00000312918 795 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
CLDN3O15551 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN3O15551 MIR554-201ENST00000384874 96 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CLDN3O15551 AC023128.2-201ENST00000420880 1223 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC007389.2-201ENST00000434630 306 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN3O15551 MTCO3P43-201ENST00000440974 771 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN3O15551 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN3O15551 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN3O15551 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.15□□□□□ -1.75
CLDN3O15551 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC007424.1-203ENST00000554613 687 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.15□□□□□ -1.75
CLDN3O15551 RMST_9.1-201ENST00000619945 193 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN3O15551 AL356863.1-201ENST00000623378 1080 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN3O15551 FRG1DP-201ENST00000635586 771 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AC083865.1-201ENST00000636634 831 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.15□□□□□ -1.75
CLDN3O15551 AC025125.1-201ENST00000624743 1922 ntBASIC4.15□□□□□ -1.75
CLDN3O15551 AC017007.4-201ENST00000503353 1352 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
CLDN3O15551 AC024560.2-201ENST00000507981 1497 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CLDN3O15551 RNU1-89P-201ENST00000384592 164 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 RNU6ATAC-201ENST00000408749 126 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 RN7SKP177-201ENST00000410567 355 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 UBE2V1P11-201ENST00000411559 285 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 PRELID3BP11-201ENST00000414230 479 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AL390879.2-203ENST00000426943 1121 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 USP12PY-201ENST00000427677 1064 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC008065.1-201ENST00000428525 348 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN3O15551 ATP5HP2-201ENST00000433885 485 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.14□□□□□ -1.75
CLDN3O15551 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN3O15551 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN3O15551 SETD6P1-201ENST00000444575 317 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AL133477.1-201ENST00000457472 514 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 RPL37P6-202ENST00000464216 403 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC084198.1-201ENST00000477747 402 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC012170.1-201ENST00000495139 359 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC005351.1-201ENST00000511152 786 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 RPL7L1P13-201ENST00000511702 739 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 RNU1-45P-201ENST00000517191 141 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC023632.4-201ENST00000517783 191 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN3O15551 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.14□□□□□ -1.75
CLDN3O15551 AC139103.1-201ENST00000534696 1030 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.14□□□□□ -1.75
CLDN3O15551 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.14□□□□□ -1.75
CLDN3O15551 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.14□□□□□ -1.75
CLDN3O15551 AL731537.2-201ENST00000561565 951 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC034105.4-201ENST00000568304 277 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.14□□□□□ -1.75
CLDN3O15551 AL137849.1-201ENST00000604767 169 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.14□□□□□ -1.75
CLDN3O15551 MIR486-1-201ENST00000612171 68 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.14□□□□□ -1.75
CLDN3O15551 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms