Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HIPK3Q9H422 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HIPK3Q9H422 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HIPK3Q9H422 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HIPK3Q9H422 FEM1AP1-201ENST00000431297 1995 ntBASIC21.12■□□□□ 0.97
HIPK3Q9H422 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HIPK3Q9H422 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HIPK3Q9H422 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HIPK3Q9H422 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 AC092119.3-201ENST00000612618 583 ntBASIC21.11■□□□□ 0.97
HIPK3Q9H422 NPAP1P7-201ENST00000613027 823 ntBASIC21.11■□□□□ 0.97
HIPK3Q9H422 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.11■□□□□ 0.97
HIPK3Q9H422 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HIPK3Q9H422 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 TSPY21P-201ENST00000433481 731 ntBASIC21.1■□□□□ 0.97
HIPK3Q9H422 TSPY23P-201ENST00000440136 739 ntBASIC21.1■□□□□ 0.97
HIPK3Q9H422 SPDYE13P-201ENST00000445314 798 ntBASIC21.1■□□□□ 0.97
HIPK3Q9H422 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HIPK3Q9H422 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HIPK3Q9H422 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
HIPK3Q9H422 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.09■□□□□ 0.97
HIPK3Q9H422 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
HIPK3Q9H422 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.09■□□□□ 0.97
HIPK3Q9H422 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.09■□□□□ 0.97
HIPK3Q9H422 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.09■□□□□ 0.97
HIPK3Q9H422 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HIPK3Q9H422 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HIPK3Q9H422 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.08■□□□□ 0.97
HIPK3Q9H422 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HIPK3Q9H422 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HIPK3Q9H422 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.08■□□□□ 0.97
HIPK3Q9H422 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HIPK3Q9H422 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.08■□□□□ 0.97
HIPK3Q9H422 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HIPK3Q9H422 PRELID1P1-202ENST00000567272 903 ntBASIC21.08■□□□□ 0.97
HIPK3Q9H422 MIR3652-201ENST00000579335 131 ntBASIC21.08■□□□□ 0.97
HIPK3Q9H422 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HIPK3Q9H422 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HIPK3Q9H422 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.08■□□□□ 0.97
HIPK3Q9H422 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HIPK3Q9H422 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
HIPK3Q9H422 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HIPK3Q9H422 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HIPK3Q9H422 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.07■□□□□ 0.96
HIPK3Q9H422 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.07■□□□□ 0.96
HIPK3Q9H422 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HIPK3Q9H422 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HIPK3Q9H422 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms