Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.99■□□□□ 0.31
MMP28Q9H239 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.99■□□□□ 0.31
MMP28Q9H239 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MMP28Q9H239 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
MMP28Q9H239 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.98■□□□□ 0.31
MMP28Q9H239 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.98■□□□□ 0.31
MMP28Q9H239 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.98■□□□□ 0.31
MMP28Q9H239 AC245052.3-201ENST00000450182 901 ntBASIC16.98■□□□□ 0.31
MMP28Q9H239 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.98■□□□□ 0.31
MMP28Q9H239 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.98■□□□□ 0.31
MMP28Q9H239 AC137761.2-201ENST00000561729 223 ntBASIC16.98■□□□□ 0.31
MMP28Q9H239 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.98■□□□□ 0.31
MMP28Q9H239 AC145350.3-201ENST00000569033 163 ntBASIC16.98■□□□□ 0.31
MMP28Q9H239 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.98■□□□□ 0.31
MMP28Q9H239 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
MMP28Q9H239 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC16.98■□□□□ 0.31
MMP28Q9H239 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.98■□□□□ 0.31
MMP28Q9H239 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.98■□□□□ 0.31
MMP28Q9H239 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
MMP28Q9H239 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
MMP28Q9H239 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MMP28Q9H239 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
MMP28Q9H239 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.97■□□□□ 0.31
MMP28Q9H239 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MMP28Q9H239 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.97■□□□□ 0.31
MMP28Q9H239 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 ID1-201ENST00000376105 1233 ntBASIC16.97■□□□□ 0.31
MMP28Q9H239 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.97■□□□□ 0.31
MMP28Q9H239 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.97■□□□□ 0.31
MMP28Q9H239 KRT18P11-201ENST00000435214 1283 ntBASIC16.97■□□□□ 0.31
MMP28Q9H239 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 SLC7A5P1-201ENST00000568957 537 ntBASIC16.97■□□□□ 0.31
MMP28Q9H239 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 UBE2DNL-204ENST00000602536 740 ntBASIC16.97■□□□□ 0.31
MMP28Q9H239 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.97■□□□□ 0.31
MMP28Q9H239 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
MMP28Q9H239 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
MMP28Q9H239 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.97■□□□□ 0.31
MMP28Q9H239 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.97■□□□□ 0.31
MMP28Q9H239 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.97■□□□□ 0.31
MMP28Q9H239 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
MMP28Q9H239 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.96■□□□□ 0.31
MMP28Q9H239 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.96■□□□□ 0.31
MMP28Q9H239 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
MMP28Q9H239 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.96■□□□□ 0.31
MMP28Q9H239 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.96■□□□□ 0.31
MMP28Q9H239 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.96■□□□□ 0.31
MMP28Q9H239 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.96■□□□□ 0.31
MMP28Q9H239 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
MMP28Q9H239 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 AL161938.1-201ENST00000569833 2180 ntBASIC16.96■□□□□ 0.31
MMP28Q9H239 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
MMP28Q9H239 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MMP28Q9H239 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MMP28Q9H239 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MMP28Q9H239 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MMP28Q9H239 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MMP28Q9H239 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
MMP28Q9H239 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms