Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.86■□□□□ 0.61
TNFP01375 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.86■□□□□ 0.61
TNFP01375 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.86■□□□□ 0.61
TNFP01375 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.86■□□□□ 0.61
TNFP01375 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.86■□□□□ 0.61
TNFP01375 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.86■□□□□ 0.61
TNFP01375 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 AC007663.1-201ENST00000438948 1240 ntBASIC18.86■□□□□ 0.61
TNFP01375 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
TNFP01375 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 AL353719.1-201ENST00000566847 864 ntBASIC18.86■□□□□ 0.61
TNFP01375 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.86■□□□□ 0.61
TNFP01375 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.86■□□□□ 0.61
TNFP01375 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 LINC01521-201ENST00000504184 1943 ntBASIC18.86■□□□□ 0.61
TNFP01375 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.86■□□□□ 0.61
TNFP01375 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TNFP01375 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.86■□□□□ 0.61
TNFP01375 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TNFP01375 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
TNFP01375 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.85■□□□□ 0.61
TNFP01375 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TNFP01375 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
TNFP01375 AC104076.2-201ENST00000448912 469 ntBASIC18.85■□□□□ 0.61
TNFP01375 PRSS44-201ENST00000515154 1146 ntBASIC18.85■□□□□ 0.61
TNFP01375 AL023803.3-201ENST00000615559 522 ntBASIC18.85■□□□□ 0.61
TNFP01375 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.85■□□□□ 0.61
TNFP01375 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.85■□□□□ 0.61
TNFP01375 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.85■□□□□ 0.61
TNFP01375 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.85■□□□□ 0.61
TNFP01375 ZNF815P-204ENST00000434898 1737 ntBASIC18.85■□□□□ 0.61
TNFP01375 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.85■□□□□ 0.61
TNFP01375 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TNFP01375 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.84■□□□□ 0.61
TNFP01375 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 AC112907.3-201ENST00000577781 2400 ntBASIC18.84■□□□□ 0.61
TNFP01375 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 AC092338.2-201ENST00000568827 1415 ntBASIC18.84■□□□□ 0.61
TNFP01375 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.84■□□□□ 0.61
TNFP01375 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 AC104417.2-201ENST00000562989 1793 ntBASIC18.84■□□□□ 0.61
TNFP01375 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
TNFP01375 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TNFP01375 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 ARMC10P1-201ENST00000313754 855 ntBASIC18.84■□□□□ 0.61
TNFP01375 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TNFP01375 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.84■□□□□ 0.61
TNFP01375 BX664615.1-201ENST00000443558 458 ntBASIC18.84■□□□□ 0.61
TNFP01375 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 AL445228.2-201ENST00000605589 952 ntBASIC18.84■□□□□ 0.61
TNFP01375 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
TNFP01375 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TNFP01375 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TNFP01375 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TNFP01375 KRT8P11-201ENST00000409686 1436 ntBASIC18.83■□□□□ 0.61
TNFP01375 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.83■□□□□ 0.61
TNFP01375 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
TNFP01375 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.83■□□□□ 0.61
TNFP01375 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.83■□□□□ 0.61
TNFP01375 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
TNFP01375 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.83■□□□□ 0.61
TNFP01375 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TNFP01375 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.83■□□□□ 0.61
TNFP01375 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms