Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CNOT4O95628 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CNOT4O95628 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.15■□□□□ 0.34
CNOT4O95628 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.15■□□□□ 0.34
CNOT4O95628 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.15■□□□□ 0.34
CNOT4O95628 FAM197Y1-201ENST00000421178 764 ntBASIC17.15■□□□□ 0.34
CNOT4O95628 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.15■□□□□ 0.34
CNOT4O95628 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.15■□□□□ 0.34
CNOT4O95628 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.15■□□□□ 0.34
CNOT4O95628 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CNOT4O95628 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 AC131212.4-201ENST00000623606 975 ntBASIC17.15■□□□□ 0.34
CNOT4O95628 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CNOT4O95628 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.15■□□□□ 0.34
CNOT4O95628 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CNOT4O95628 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CNOT4O95628 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
CNOT4O95628 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CNOT4O95628 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
CNOT4O95628 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
CNOT4O95628 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.14■□□□□ 0.33
CNOT4O95628 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
CNOT4O95628 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.14■□□□□ 0.33
CNOT4O95628 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.14■□□□□ 0.33
CNOT4O95628 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.14■□□□□ 0.33
CNOT4O95628 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.14■□□□□ 0.33
CNOT4O95628 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.14■□□□□ 0.33
CNOT4O95628 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.14■□□□□ 0.33
CNOT4O95628 CR392000.1-201ENST00000624770 1228 ntBASIC17.14■□□□□ 0.33
CNOT4O95628 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.14■□□□□ 0.33
CNOT4O95628 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
CNOT4O95628 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.14■□□□□ 0.33
CNOT4O95628 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.14■□□□□ 0.33
CNOT4O95628 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.14■□□□□ 0.33
CNOT4O95628 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CNOT4O95628 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CNOT4O95628 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CNOT4O95628 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.13■□□□□ 0.33
CNOT4O95628 TSPY15P-201ENST00000457163 923 ntBASIC17.13■□□□□ 0.33
CNOT4O95628 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CNOT4O95628 AC116562.2-201ENST00000507042 360 ntBASIC17.13■□□□□ 0.33
CNOT4O95628 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.13■□□□□ 0.33
CNOT4O95628 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.13■□□□□ 0.33
CNOT4O95628 AP003071.4-201ENST00000562276 1284 ntBASIC17.13■□□□□ 0.33
CNOT4O95628 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.13■□□□□ 0.33
CNOT4O95628 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.13■□□□□ 0.33
CNOT4O95628 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CNOT4O95628 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.13■□□□□ 0.33
CNOT4O95628 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.13■□□□□ 0.33
CNOT4O95628 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CNOT4O95628 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
CNOT4O95628 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.13■□□□□ 0.33
CNOT4O95628 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms